FastQCFastQC Report
Fri 7 Jul 2023
SRR7182553_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7182553_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29992819
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAAA7871632.6245048856527955No Hit
TATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAA3260791.087190237103088No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGCAAAAAAAAAA2779750.9268051795998236No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGAAAAAAAAAAAAAAAAAAA1924350.6416035785099093No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCAAAAAAAAAAAAAAAAAAAA1754050.5848233205421605No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCAAAAAAAAAAAAAAAAAA1408980.4697724478649373No Hit
TATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGCAAAAAAAAA1310310.4368745732103408No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGATAAAAAAAAAA1262520.4209407591863906No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGAAAAAAAAAAA1107600.36928839533222935No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1023770.34133837169490466No Hit
CATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAA1015420.338554371964836No Hit
TCATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAA997680.3326396228377199No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTAAAAAAAAA859970.28672529914577216No Hit
TCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCTTCCCGTGGATCG853190.28446475804758464No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCAAAAAAAAAAAAAAAAAAAA774650.2582784899278724No Hit
ACATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAA700280.2334825546074879No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAAA699640.2332691701970395No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAA699400.23318915104312132No Hit
TATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGATAAAAAAAAA603980.20137486909783306No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTGAAAAAAAAA598100.19941439982683853No Hit
TTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAAAA587870.1960035833910777No Hit
TCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGAG587390.1958435450832414No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAAA538040.1793896065588233No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCTAAAAAAAAAAAAAAAAAAA527640.1759221098890371No Hit
TATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGAAAAAAAAAA520760.17362822747671702No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGTAAAAAAAAAAAAAAAAAA513280.17113429717960157No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGAAAAAAAAAAAAA511300.17047413915977688No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGAAAAAAAAAAAAAAAAAAAAGA472930.15768107692711378No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCAAAAAAAAAAAAAAAAAAAAGAT465560.15522382207554417No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCCAAAAAAAAAAAAAAAAAAA462650.15425358983428666No Hit
TCGGGACCGGGGTCCGGTGCGGAGTGCCCTTCGAAAAAAAAAAAAAAAAA450040.1500492501221709No Hit
TCGGGACCGGGGTCCGGTGCGGAGTGCCCTTCAAAAAAAAAAAAAAAAAA448690.14959914238138136No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGTGAAAAAAAAAAAAAAAAAAA440170.14675846241728727No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCAAAAAAAAAAAAAA421540.14054697559439144No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGACAAAAAAAAAAAAAAAAAAAA410880.1369927915078606No Hit
TCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCG406210.13543575213787007No Hit
TCATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGCAAAAAAAA400860.13365199183177814No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAAAAAAAAAAA398190.1327617787444388No Hit
CATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGCAAAAAAAAA385430.1285074270611242No Hit
TATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTTAAAAAAAA369580.12322282877111353No Hit
ATCTGAGGGTCCAGGGTTCAGGTCCCTGTTCGGGCGCCAAAAAAAAAAAA364430.1215057510932867No Hit
ATTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGGAAAAAAAAAA358080.11938857764586916No Hit
TCCCTGGTGGTCTAGTGGCTAGGATTCGGCGAAAAAAAAAAAAAAAAAAA356330.11880510464854938No Hit
TTTGATCATCGACACTTCGAACGCACTTGCGGCCCCGGGTAAAAAAAAAA351970.11735142335236978No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCAAAAAAAAAAAAAAAAAAAG348350.11614446778077112No Hit
TCCCTGGTGGTCTAGTGGCTAGGATTCGGCAAAAAAAAAAAAAAAAAAAA347390.11582439116509856No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCAAAAAAAAAAAAAAAAAAA347170.11575104027400693No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGAAAAAAAAAAAAAAAAAAAAA344340.11480748108405549No Hit
TTCCCTGGTGGTCTAGTGGTTAGGATTCGGCAAAAAAAAAAAAAAAAAAA343350.11447740207414314No Hit
TTCCCTGGTGGTCTAGTGGTTAGGATTCGGCGAAAAAAAAAAAAAAAAAA319390.10648882320798189No Hit
TCGTCGCGCGCGCGTCCGCTGGGGGCGGGGAGCGGTAAAAAAAAAAAAAA311680.10391820788836154No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCAAAAAAAAAAAAAAAAAAAA306320.10213111345085636No Hit
TCTACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAAAAAAA303600.10122422970645073No Hit
TACTTGGATAACTGTGGTAATTCTAGAGCTAATACATGCCGAAAAAAAAA302780.10095083093056374No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGAAAAAAAAAAAAAAAAAAAAG301570.10054740102955978No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)