FastQCFastQC Report
Fri 7 Jul 2023
SRR7235647_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7235647_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45773542
Total Bases3.7 Gbp
Sequences flagged as poor quality0
Sequence length83
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCGCCGCCGGGCGCACTTCCACCGTGGCGGTGCGCCGCGACCGGCTCC2445950.5343589097824241No Hit
GGGGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGG1941610.4241773555561857No Hit
GGGCGCCGCCGGGCGCACTTCCACCGTGGCGGTGCGCCGCGACCGGCTCC1573070.34366359500866245No Hit
GCCGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGG1553780.3394493701186594No Hit
CGGCGCCGCCGGGCGCACTTCCACCGTGGCGGTGCGCCGCGACCGGCTCC1508750.32961180937232254No Hit
CCCCGCCGCCGGGCGCACTTCCACCGTGGCGGTGCGCCGCGACCGGCTCC1424130.3111251473613294No Hit
GCGCGCCGCCGGGCGCACTTCCACCGTGGCGGTGCGCCGCGACCGGCTCC1379610.30139900469140013No Hit
GCCTGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGG1369170.2991182111272927No Hit
CGCTGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGG1358020.2966823061234807No Hit
CCCTGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGG1354230.29585431688900105No Hit
CGCCGCCGCCGGGCGCACTTCCACCGTGGCGGTGCGCCGCGACCGGCTCC1277800.2791568981050232No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1248300.2727121270187044No Hit
CCCGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGG1246280.2722708240494039No Hit
GGCTGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGG1208250.26396253101846473No Hit
CCGGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGG1071770.23414617990453962No Hit
CCGTGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGG1052700.22998001771416338No Hit
GGGTGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGG1050690.22954089941302774No Hit
CCGGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGA1021070.22306991230873063No Hit
GCGTGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGG918870.20074260366392446No Hit
GGCCGCCGCCGGGCGCACTTCCACCGTGGCGGTGCGCCGCGACCGGCTCC885580.19346984334312603No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAGA882670.19283410490715358No Hit
GGGGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGA875580.1912851751782722No Hit
GCGGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGG862080.1883358731557195No Hit
CGCGCCGCCGGGCGCACTTCCACCGTGGCGGTGCGCCGCGACCGGCTCCG841550.1838507494132746No Hit
CCCCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGAAA802740.17537205226547684No Hit
CGGTGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGG797590.17424694816057712No Hit
CCGCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGAAA780100.17042596354024778No Hit
CGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAGA779330.17025774409155403No Hit
CGCGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGG768450.16788082512819305No Hit
GCCCGCCGCCGGGCGCACTTCCACCGTGGCGGTGCGCCGCGACCGGCTCC714370.1560661396926635No Hit
GGCGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGG708110.154698537421465No Hit
GCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAGA700790.153099360324792No Hit
GCGGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGA683950.14942037913517814No Hit
GGCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAGA666320.14556880916054082No Hit
CCGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAGA625450.13664007037078318No Hit
CCCGCCGCCGGGCGCACTTCCACCGTGGCGGTGCGCCGCGACCGGCTCCG603010.13173767500885117No Hit
CGCCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGAAA587490.12834707001699802No Hit
GGGCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGAAA571710.12489966365285868No Hit
CCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGA545380.11914743237479854No Hit
CGGCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGAAA525860.11488296011700383No Hit
GCGCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGAAA524860.11466449330051845No Hit
AAACTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAA517730.11310682489897768No Hit
CCGGGATGGCGCTGGAGCGTCGGGCCCATACCCGGCCGTCGCCGGCAGTC510130.11144647709368875No Hit
GCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTGAAAATCCGGGGGAGA489780.1070006773782112No Hit
CCCCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAAAAA483380.10560248975270475No Hit
CGGGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGG480910.10506287671598585No Hit
CCGCGCCGCGACCGGCTCCGGGACGGCCGGGAAAAAAAAAAAAAAAGATC478200.10447083164331045No Hit
CCGCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAAAAA468960.1024521982589855No Hit
GGGCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAGA468850.10242816690917211No Hit
CCCCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAG464600.10149968293910923No Hit
CCCCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAGAT463310.10121786074584309No Hit
CGGGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAGAT460900.10069135571811332No Hit
GGCCGGCCGATCGAAAGGGAGTCGGGTTCAGATCCCCGAATCCGGAGAAA458660.10020199004918606No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)