FastQCFastQC Report
Tue 22 Aug 2023
SRR7235818_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7235818_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57027050
Total Bases2.9 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATG11307501.9828309547837386TruSeq Adapter, Index 2 (100% over 49bp)
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG1160330.2034701076068287No Hit
GAATACAAGCTTGGGCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAA649830.1139511863229818No Hit
AACACGGACCAAGGAGTCTAACGCGTGCGCGAGTCAGGGGCTCGTCCGAA597430.1047625644321423No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)