FastQCFastQC Report
Thu 28 Sept 2023
SRR7293729.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7293729.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15556289
Total Bases777.8 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCGGCCGAGGTGGGATCCCGAGGCGGGACTCTAGAGATCGGAAGAGC309220.19877491347711526No Hit
CCACCGGCCGAGGTGGGATCCCGAGGCTGGACTCTAGAGATCGGAAGAGC252730.16246162564863637No Hit
CCACCGGCCGAGGTGGGATCCCGAGGCGGTACTCTAGAGATCGGAAGAGC248040.15944676779918399No Hit
GAGACCGCCGAGGGCGCACCACCGGCCCGTCTCGATCTGTCTAGAGATCG229030.14722662969298142No Hit
CCACCGGCCGAGGTGGGATCCCGAGGCCTGTGACTCTAGAGATCGGAAGA227580.14629453078430207No Hit
CCACCGGCCGAGGTGGGATCCCGAGGCGGTAGTCTAGAGATCGGAAGAGC215920.13879916990485328No Hit
CCACCGGCCGAGGTGGGATCCCGAGGCGGAATTCTAGAGATCGGAAGAGC213230.13706996572254476No Hit
GCGAGAGGGCGCACCACCGGCCCGTCTCGCGTGAGTCTAGAGATCGGAAG199290.12810895966255192No Hit
GAGACCGCCGAGGGCGCACCACCGGCCCGTCTCGATCTATCTAGAGATCG171800.11043765000765927No Hit
GAGACCGCCGAGGGCGCACCACCGGCCCGTCTCGATCACTCTAGAGATCG166010.10671568264127775No Hit
CCACCGGCCGAGGTGGGATCCCGAGGCGTGGCTCTAGAGATCGGAAGAGC158460.1018623400478096No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)