FastQCFastQC Report
Fri 7 Jul 2023
SRR7405198_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7405198_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64077265
Total Bases3.2 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5791680.9038588023380836No Hit
GTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGAGATCGGAAGAGC3586560.5597242641364296No Hit
GTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTAGATCGGAAGAG3061080.47771701866488836No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAGATCGGAAGAGCACA2888790.45082916694400116No Hit
GTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTCAGATCGGAAGA2405660.37543112990231403No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGACAGATC2259400.35260556142650595No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAGCCCTCCGGCCGCAG2245970.3505096542432016No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG2233140.34850738401521975No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAGCAGATCGGAAGAGC2053290.3204397066572676No Hit
GTGTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTCAGATCGGAA1554650.24262115432049106No Hit
TCTCTCGGGGCCCGGTGGGGGGCGGGGCGGACTGTCCAGATCGGAAGAGC1391490.21715814493642951No Hit
TCTCGGGGCCCGGTGGGGGGCGGGGCGGACTGTCCAGATCGGAAGAGCAC1294430.20201080679707537No Hit
ACCACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGATCGGAAGAGCAC1215450.1896850622447759No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAGCCCAGATCGGAAGA1179130.18401690521591393No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAGAGATCGGAAGAGCA1155180.18027923008261978No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAAGATCGGAAGAGCAC1117170.17434732896293248No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAGCCCTAGATCGGAAG975750.15227709859339347No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAGCCAGATCGGAAGAG940410.14676188192489178No Hit
AACACGGACCAAGGAGTCTAACGCGTGCGCGAGTCAGATCGGAAGAGCAC939960.1466916542083998No Hit
AGGCCCGGTGGGGAAGGTGGCTCGGGGGGGGCGGCGCGTCTCAGATCGGA912080.14234065701774257No Hit
CTCTCGGGGCCCGGTGGGGGGCGGGGCGGACTGTCCAGATCGGAAGAGCA797980.12453402934722636No Hit
ACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCCGGCGCTCAGATCGGA782890.12217905992086273No Hit
TCCGTCGCCTCTCTCGGGGCCCGGTGGGGGGCGGGGCGGACTGTCCAGAT760540.11869108333509554No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAG728620.11370959731193271No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGG723350.1128871527210158No Hit
AACACGGACCAAGGAGTCTAACGCGTGCGCGAGTCAGGGGCTCGTCCGAA721100.11253601413855602No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAGCCCTCCGGCAGATC711150.11098320129612274No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATG709620.11074442706005007TruSeq Adapter, Index 1 (100% over 49bp)
AAGGCCCGGTGGGGAAGGTGGCTCGGGGGGGGCGGCGCGTCTCAGATCGG696450.10868909589071882No Hit
AACACGGACCAAGGAGTCTAACGCGTGCGCGAGTAGATCGGAAGAGCACA679190.10599547280927175No Hit
TGTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTAGATCGGAAGA676260.10553821234411301No Hit
TGTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGAGATCGGAAGAG664700.10373414033823074No Hit
TGTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTCAGATCGGAAG662540.10339704729906934No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)