FastQCFastQC Report
Mon 10 Jul 2023
SRR7405202_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7405202_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88990895
Total Bases4.4 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGACAGATC9523911.0702117334587993No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAGATCGGAAGAGCACA5920090.6652467086660945No Hit
GTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTAGATCGGAAGAG4573210.5138963935580152No Hit
GTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTCAGATCGGAAGA3899690.43821224632025557No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3367580.37841848876786777No Hit
GTGTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTCAGATCGGAA3139660.3528068798498993No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAGCAGATCGGAAGAGC3049130.342633929010378No Hit
GTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGAGATCGGAAGAGC3047730.3424766095452799No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAGCCCTCCGGCCGCAG2932940.32957753711770177No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGATCATCTCGTATG2735740.30741796674817123TruSeq Adapter, Index 7 (100% over 49bp)
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTCGGGGGGGCAGATCG2630100.2955470893960556No Hit
AACACGGACCAAGGAGTCTAACGCGTGCGCGAGTCAGATCGGAAGAGCAC2553370.28692485899821546No Hit
AACACGGACCAAGGAGTCTAACGCGTGCGCGAGTAGATCGGAAGAGCACA1724470.19378049855549828No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGACAGATCGG1715250.1927444375067809No Hit
AACACGGACCAAGGAGTCTAACGCGTGCGCGAGTCAGGGGCTCGTCCGAA1673570.18806081228871785No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAAGATCGGAAGAGCAC1633270.18353225911482293No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAGAGATCGGAAGAGCA1556520.17490778129605283No Hit
ACCCCCCTCCGTCGCCTCTCTCGGGGCCCGGTGGGGGGCGGGGCGGACTG1418570.15940619543156634No Hit
AGGCCCGGTGGGGAAGGTGGCTCGGGGGGGGCGGCGCGTCTCAGATCGGA1406600.15806111400497772No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTCGGGGGGGAGATCGG1343400.15095926386626407No Hit
GCCGGGCGCGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG1338110.1503648210302863No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAGCCCAGATCGGAAGA1314250.1476836478608289No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCCGCAGCTTTCGCCGAATCCC1306050.14676220527954012No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTCGGGGGAGATCGGAA1288730.14481593875418378No Hit
ACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCCGGCGCTCCAGATCGG1278050.1436158159775784No Hit
ACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCCGGCGCTCAGATCGGA1262890.14191227091265912No Hit
TCTCGGGGCCCGGTGGGGGGCGGGGCGGACTGTCCAGATCGGAAGAGCAC1254620.1409829623581154No Hit
TCTCCCACCCCCCTCCGTCGCCTCTCTCGGGGCCCGGTGGGGGGCGGGGC1252540.14074923058139824No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAGCCAGATCGGAAGAG1245460.13995364357218792No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCAGATCGGAAGAGC1174730.13200563945333957No Hit
TCTCTCGGGGCCCGGTGGGGGGCGGGGCGGACTGTCCAGATCGGAAGAGC1151540.12939975488503627No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCAGATCGGAAGAGCAC1096330.12319574940784672No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTCGGGGGGAGATCGGA1075250.12082696774765554No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAGCCCTAGATCGGAAG1011700.11368578774266738No Hit
AAGGCCCGGTGGGGAAGGTGGCTCGGGGGGGGCGGCGCGTCTCAGATCGG981820.11032814087328822No Hit
ACCGGCTCCGGGACGGCCGGGAAGGCCCGGTGGGGAAGGTAGATCGGAAG952290.10700982387018357No Hit
ACCCGCGCGTCGTTCCCCTCTTCCTCCCCGCGTCCGGAGATCGGAAGAGC951550.10692666929577457No Hit
TGTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTCAGATCGGAAG944960.1061861440993486No Hit
CTCCCACCCCCCTCCGTCGCCTCTCTCGGGGCCCGGTGGGGGGCGGGGCG930630.10457586700302318No Hit
AGGGCGCGCCGAACCACCTCACCCCGAGTGTTACAGCCCTCCGGCAGATC922440.10365554813219938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)