FastQCFastQC Report
Sat 8 Jul 2023
SRR7405206_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7405206_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences181604014
Total Bases9 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTAGATCGGAAGAG39032392.149313175423534No Hit
AGCCCTCCGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAGCAGATC31384061.7281589381609155No Hit
GTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTCCAGATCGGAAG14100770.7764569565075803No Hit
GTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTCAGATCGGAAGA9902680.5452897092902362No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCGTCCAGATCGGAAGAGC9112580.5017829616915847No Hit
AGCCCTCCGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAAGCCAGAT7079040.3898063618792038No Hit
TGTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTAGATCGGAAGA5369860.2956906007595185No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATG5252540.28923039113001103TruSeq Adapter, Index 11 (100% over 49bp)
AGCCCTCCGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGAGATCGGAAG4963570.27331829790942835No Hit
ACTTCCACCGTGGCGGTGCGCCGCGACCGGCTCCGGGAAGATCGGAAGAG4231220.23299154610095787No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCGTAGATCGGAAGAGCAC4078960.22460737018731317No Hit
GTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGAGATCGGAAGAGC3830820.21094357528903518No Hit
GTGTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTCCAGATCGGA3725300.2051331310331059No Hit
ACTTCCACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCAGATCGGA3632650.20003137155327416No Hit
AACGCGACCGATCCCGGAGAAGCCGGCGGGAGCCCCGGGGAGAGTAGATC3466450.19087959146101252No Hit
GTGTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTAGATCGGAAG2782910.1532405555749445No Hit
TGTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTCCAGATCGGAA2722950.14993886643937285No Hit
GTGTGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTCAGATCGGAA2691470.1482054245783356No Hit
AACCCCGCGGGGGTTCCGGAGCGGGAGGAACCAGCGGGCCCCCGGTGGGG2516270.13855806072656524No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2418810.1331914392597071No Hit
ACTTCCACCGTGGCGGTGCGCCGCGACCGGCTCCGGAGATCGGAAGAGCA2397890.1320394823431601No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGGACAGATCGG2368940.13044535458340695No Hit
TGGGGGGAACCTCCGCGTCGGTGTTCCCCCGCCGGGTAGATCGGAAGAGC2236250.12313879802238292No Hit
ACTTCCACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACAGATCGGAAGA2181510.12012454746732634No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCGTCAGATCGGAAGAGCA2111440.11626615257523988No Hit
AGCCCTCCGGCCGCAGCTTTCGCCGAATCCCGGGGCCGAGGAGATCGGAA2105090.11591649070047537No Hit
AAGGGCTGGGTCGGTCGGGCTGGGGCGCGAAGCGGGGCTAGATCGGAAGA2066380.11378492988596606No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCAGATCGGAAGAGCAC1970530.10850696284719785No Hit
ACCGTGGCGGTGCGCCGCGACCGGCTCCGGGACGGCAGATCGGAAGAGCA1910990.10522840095373662No Hit
GTGCGGGCGGGCGCGACCCGCTCCGGGGACAGTGCCAGGTAGATCGGAAG1837630.10118884266511863No Hit
AAGGGCTGGGTCGGTCGGGCTGGGGCGCGAAGCGGGGCAGATCGGAAGAG1826440.10057266685746274No Hit
ACTTCCACCGTGGCGGTGCGCCGCGACCGGCTCCGGGAGATCGGAAGAGC1825050.10049612669904971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)