FastQCFastQC Report
Fri 7 Jul 2023
SRR7516857_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7516857_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44277057
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length35-55
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAA3281720.7411784392083692No Hit
GGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAA3123210.7053788602074433No Hit
CCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAA2423550.5473602276682482No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN2070410.4676033459044038No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1472810.3326350258554899No Hit
GGGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAA1329080.3001735187593882No Hit
GCGGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAA1168070.26380931325223356No Hit
GCGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAA1110200.2507393388860511No Hit
CGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAA1087600.24563511526974344No Hit
GCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAA1054350.2381255827369014No Hit
GGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAA1003670.22667947420263274No Hit
GCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAA971640.21944547940483033No Hit
CCGGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAA851620.19233889009380184No Hit
CCGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAA848120.19154841298508163No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAAAAA830110.18748084363420994No Hit
GGGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGAACGGAA824360.18618220266988386No Hit
CCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAA768430.1735503784725349No Hit
CCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAA723520.1634074279146421No Hit
GGGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGATCGGAA670870.15151639369346523No Hit
CCGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAAAAA670110.15134474723557167No Hit
GGCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAA664910.15017032410261594No Hit
GCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGAACGGAA657130.14841320641523217No Hit
GGGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAA653800.1476611239089355No Hit
GGGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCAAAAAAAAAAAAAA644040.14545682202861857No Hit
GCGGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAA631210.14255915879865277No Hit
GCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAA612000.13822056872479124No Hit
GCGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGATCGGAAGA601760.1359078585552784No Hit
GGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAA578030.13054842375815537No Hit
GCGGGGGGGGATGCGTGCATTTATCGAAAAAAAAAAAAAA570270.12879582308282142No Hit
GGGCGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAA551060.12445723300895993No Hit
CCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAAGAACGGAA540470.12206547512857505No Hit
GCGGGGGCTCTCGCTTCTGGCGCCAAGCGTCCGAAAAAAAAAAAAAAAGA498910.11267912408902878No Hit
GGGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAGAACGGAAGA489850.1106329176304559No Hit
CCGGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAA488990.1104386861123132No Hit
GGGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAA473880.1070260835086668No Hit
CCGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAA452110.1021093158924271No Hit
GGGGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAAAAAAAAAAAAA451740.10202575116950523No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)