FastQCFastQC Report
Thu 29 Jun 2023
SRR788070.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR788070.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20389643
Total Bases713.6 Mbp
Sequences flagged as poor quality0
Sequence length35
%GC34

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATAAATCATTTGTATACGACTTAGATAAAAAAAAA1164890.5713145639675987No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA1021950.5012103448795057No Hit
GCGGAGAATTTGGACAAACTTGGTCATTAAAAAAA466520.22880243660960614No Hit
ATGATTAATAGGGACGGTCGGGGGCAAAAAAAAAA427530.2096799831169187No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAA424430.2081596033829528No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAAA422550.2072375666410638No Hit
AGCGGAGAATTTGGACAAACTTGGTCAAAAAAAAA422240.2070855286676672No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTAAAAAA384380.1885172781102641No Hit
GGCGCCAGTGAAATACCACTACCTTTAAAAAAAAA324150.1589777712145328No Hit
AGCGGAGAATTTGGACAAACTTGGTCATAAAAAAA309640.15186141316942137No Hit
TAGCGGAGAATTTGGACAAACTTGGTCAAAAAAAA309400.15174370635130788No Hit
GCGGAGAATTTGGACAAACTTGGTCAAAAAAAAAA290880.1426606635535502No Hit
ATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAAAA265380.13015431412899187No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATTAAAAA254930.1250291630903003No Hit
GCGGAGAATTTGGACAAACTTGGTCATAAAAAAAA251840.12351368780708911No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA248390.1218216522967077No Hit
GATTAAGCCTTTGTTGTCTGATTTGTAAAAAAAAA235610.11555376423216435No Hit
GCCAAGGACGTTTTCATTAATCAAGAACAAAAAAA230450.11302306764272431No Hit
TCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAA227680.11166453478366443No Hit
ATAAATCATTTGTATACGACTTAGACAAAAAAAAA215600.1057399582719521No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATAAAAAA213330.10462664795062866No Hit
GGCGCCAGTGAAATACCACTACCTTTATAAAAAAA212640.10428824084855239No Hit
TTTGCTCGAATATATTAGCATGGAATAAAAAAAAA204040.10007041319948565No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)