FastQCFastQC Report
Tue 27 Jun 2023
SRR788071.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR788071.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19608026
Total Bases686.2 Mbp
Sequences flagged as poor quality0
Sequence length35
%GC34

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA2990711.5252478755383128No Hit
GCCAAGGACGTTTTCATTAATCAAGAACGAAAAAA2007151.023636953561771No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTAAAAAA1906680.9723977314187568No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATTAAAAA1547490.7892125398038538No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAA1396940.712432755852119No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAAA1337020.6818738408445604No Hit
GCCAAGGACGTTTTCATTAATCAAGAACAAAAAAA1255180.6401358300932486No Hit
GCGGAGAATTTGGACAAACTTGGTCATTAAAAAAA1156900.590013497534122No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAA887590.45266667843055697No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA817090.4167120137437598No Hit
TGTACAACGGGGTATTGTAAGCAGTAGAGTAAAAA778850.397209795621446No Hit
AGCGGAGAATTTGGACAAACTTGGTCAAAAAAAAA746620.38077264891427626No Hit
AGCGGAGAATTTGGACAAACTTGGTCATAAAAAAA665670.3394885339299326No Hit
TAGCGGAGAATTTGGACAAACTTGGTCAAAAAAAA623490.3179769345471084No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAAAA613840.31305548044458936No Hit
ATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAAAA590840.3013255898375492No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATAAAAAA537470.2741071436767781No Hit
TGCGGAGAATTTGGACAAACTTGGTCATTAAAAAA519000.264687531524081No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAA476270.24289543475717545No Hit
GCGGAGAATTTGGACAAACTTGGTCATTTAAAAAA454760.23192543706337396No Hit
GCGGAGAATTTGGACAAACTTGGTCAAAAAAAAAA450820.22991605580286356No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTTAAAAA450100.22954885922733884No Hit
TCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAA443790.22633078923905955No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAA417860.2131066125677312No Hit
ATGATTAATAGGGACGGTCGGGGGCAAAAAAAAAA416980.21265781675320095No Hit
TGTACAACGGGGTATTGTAAGCAGTAGAGCAAAAA415880.21209682198503818No Hit
GCGGAGAATTTGGACAAACTTGGTCATAAAAAAAA401560.2047936900940462No Hit
TCCGTGATAGTTTAATGGTCAGAATGGGCAAAAAA400560.20428369485026182No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAAA393590.20072902800108489No Hit
GCCAAGGACGTTTTCATTAATCAAAAAAAAAAAAA346610.1767694514480958No Hit
TTTGCTCGAATATATTAGCATGGAATAATAAAAAA342670.17476007018758544No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCGAAAAA337730.1722406936832907No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATTTAAAA333210.16993551518138542No Hit
AGCGGAGAATTTGGACAAACTTGGCCAAAAAAAAA329140.1678598345391831No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAAAAA294220.15005080062623335No Hit
ATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAAAA280550.1430791656437012No Hit
GCCAAGGACGTTTTCATTAATCAAGAAAAAAAAAA275620.1405648890918443No Hit
TAGCGGAGAATTTGGACAAACTTGGCCAAAAAAAA272070.13875440597640987No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAA258170.13166547208780732No Hit
GGCGCCAGTGAAATACCACTACCTTTAAAAAAAAA243130.12399514362129059No Hit
TGCGGAGAATTTGGACAAACTTGGTCAAAAAAAAA228680.11662571234860664No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAA222970.11371363950659796No Hit
ATGGCTTAGTGAGGCCTCAGGATCTGCCAAAAAAA219650.1120204552972339No Hit
AATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAAA211600.10791499358476983No Hit
GATTAAGCCTTTGTTGTCTGATTTGTAAAAAAAAA206830.10548231627191845No Hit
TGAGATTAAGCCTTTGTTGTCTGATTTGTAAAAAA203550.10380953187230577No Hit
TTGCTCGAATATATTAGCATGGAATAATAAAAAAA199280.10163185218134654No Hit
TGCGGAGAATTTGGACAAACTTGGTCATTTAAAAA196720.10032626435725861No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)