FastQCFastQC Report
Thu 29 Jun 2023
SRR788072.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR788072.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18188339
Total Bases636.5 Mbp
Sequences flagged as poor quality0
Sequence length35
%GC33

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA738650.40611185001555117No Hit
GGCGCCAGTGAAATACCACTACCTTTAAAAAAAAA579790.31877017467070523No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAA538970.2963272237228479No Hit
GGCGCCAGTGAAATACCACTACCTTTATAAAAAAA401000.2204709292035958No Hit
GCGGAGAATTTGGACAAACTTGGTCATTAAAAAAA382300.21018961654497423No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTAAAAAA346990.19077607911310648No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAAA320400.17615682223648899No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAA311790.17142301999099532No Hit
AGCGGAGAATTTGGACAAACTTGGTCAAAAAAAAA294990.162186332682715No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA250900.13794552652663886No Hit
GATTAAGCCTTTGTTGTCTGATTTGTAAAAAAAAA239880.13188669949465975No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATTAAAAA224890.12364515528328343No Hit
AGCGGAGAATTTGGACAAACTTGGTCATAAAAAAA223190.12271049049613601No Hit
GCGGAGAATTTGGACAAACTTGGTCAAAAAAAAAA208300.11452392656635661No Hit
TAGCGGAGAATTTGGACAAACTTGGTCAAAAAAAA198610.10919633727961636No Hit
ATGATTAATAGGGACGGTCGGGGGCAAAAAAAAAA196430.10799776714080378No Hit
GCCAAGGACGTTTTCATTAATCAAGAACGAAAAAA188740.10376978348600166No Hit
TTGATGATTCATAATAACTTTTCGAATCGCAAAAA185590.1020379046156991No Hit
ATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAAAA182390.10027853560459808No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)