FastQCFastQC Report
Tue 27 Jun 2023
SRR788073.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR788073.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21039284
Total Bases736.3 Mbp
Sequences flagged as poor quality0
Sequence length35
%GC32

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGCTCGAATATATTAGCATGGAATAATAGAATA11766185.5924811889986366No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAATAA9642784.583226311313636No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAAAA4850472.305434918792864No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAAAAA4042141.921234581937294No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA2535901.205316682830081No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATTTAA1677840.7974796100475662No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTAAAAAA1554460.7388369300019906No Hit
TGCTCGAATATATTAGCATGGAATAATAGAATAAA1523950.7243354859414418No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAACA1481210.7040211064216824No Hit
GCCAAGGACGTTTTCATTAATCAAGAACGAAAAAA1362630.6476598728359767No Hit
TTGCTCGAATATATTAGCATGGAATAATAAAAAAA1279610.6082003551071415No Hit
TTTGCTCGAATATATTAGCATGGAATAATAAAAAA1259910.5988369185947582No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCATA1121830.5332073087658307No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAACAA1062000.5047700292462425No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTTAAAAA1007070.4786617263211048No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATTAAAAA987510.4693648319971345No Hit
GCGGAGAATTTGGACAAACTTGGTCATTAAAAAAA986420.4688467535302057No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAA978120.4649017523600138No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAA930980.44249604691870686No Hit
GTTGCTCGAATATATTAGCATGGAATAATAGAATA923930.43914517243077283No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATAA909970.4325099656433175No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAAA827050.3930979780490629No Hit
GCCAAGGACGTTTTCATTAATCAAGAACAAAAAAA797530.3790670823208623No Hit
TGTACAACGGGGTATTGTAAGCAGTAGAGTAAAAA778870.37019795920811754No Hit
GCTCGAATATATTAGCATGGAATAATAGAATAAAA688640.3273115187760192No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA681720.32402243346303994No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAGTA667580.31730167243333945No Hit
TGCTCGAATATATTAGCATGGAATAATAGAAAAAA664050.31562385868264337No Hit
CTTGCTCGAATATATTAGCATGGAATAATAGAATA638310.3033896020415904No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATTTAAAA633300.30100834229910106No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGTCATTTAA615270.2924386590342143No Hit
TTGCTCGAATATATTAGCATGGAATAAAAAAAAAA600790.28555629554693973No Hit
GAATATATTAGCATGGAATAATAGAATAAAAAAAA590750.2807842700350449No Hit
CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAG559680.26601665722084455No Hit
AGCGGAGAATTTGGACAAACTTGGTCAAAAAAAAA553970.26330268653629085No Hit
GCGGAGAATTTGGACAAACTTGGTCATTTAAAAAA528710.2512965745412249No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCAAA495130.23533595534905083No Hit
AGCGGAGAATTTGGACAAACTTGGTCATAAAAAAA494140.23486540701670267No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCAAAA469760.22327756020594616No Hit
TATTCCAGGGGGCATGCCTGTTTGAGCGTCATTTA460260.21876219742078673No Hit
TTGCCAAGGACGTTTTCATTAATCAAGAACGAAAA444450.21124768314358988No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAA421090.20014464370555576No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAGTAA412120.19588119063367365No Hit
CGAATATATTAGCATGGAATAATAGAATAAAAAAA401410.19079071322008867No Hit
TTTGCTCGAATATATTAGCATGGAATAAAAAAAAA377820.17957835447251913No Hit
GTTGCTCGAATATATTAGCATGGAATAATAGAAAA371330.17649364873823653No Hit
ATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAAAA356450.16942116471263946No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAA347040.1649485790486026No Hit
TAGCGGAGAATTTGGACAAACTTGGTCAAAAAAAA339830.16152165634533952No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATAAAAAA321070.15260500309801417No Hit
TGTACAACGGGGTATTGTAAGCAGTAGAGCAAAAA310650.147652363074713No Hit
GCTCGAATATATTAGCATGGAATAATAGAAAAAAA300070.14262367483608282No Hit
GTTACGATCTGCTGAGATTAAGCCTTTGTTGTCTG299050.14213886746336044No Hit
TCTACATGGTATAACTGTGGTAATTCTAGAGCTAA293190.1393536015769358No Hit
TGCGGAGAATTTGGACAAACTTGGTCATTAAAAAA281760.1339209071943703No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAA281750.13391615418091224No Hit
GCGGAGAATTTGGACAAACTTGGTCATAAAAAAAA281730.1339066481539961No Hit
TCCGTGATAGTTTAATGGTCAGAATGGGCAAAAAA279200.1327041357491063No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAA275940.13115465336177792No Hit
AATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAAA270610.12862129718863058No Hit
CTTGCTCGAATATATTAGCATGGAATAATAGAAAA262550.12479036834143215No Hit
TTGCTCGAATATATTAGCATGGAAAAAAAAAAAAA247180.11748498665639003No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATTAAA235860.11210457542186322No Hit
TCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAA235650.11200476213924392No Hit
GGCGCCAGTGAAATACCACTACCTTTAAAAAAAAA230570.10959023130254814No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAAA223340.10615380257236891No Hit
TCCAGGGGGCATGCCTGTTTGAGCGTCATTTAAAA218540.10387235611249888No Hit
GCGGAGAATTTGGACAAACTTGGTCAAAAAAAAAA217390.10332575956482168No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCGAAAAA211360.10045969244960999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)