FastQCFastQC Report
Tue 27 Jun 2023
SRR788074.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR788074.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17756997
Total Bases621.4 Mbp
Sequences flagged as poor quality0
Sequence length35
%GC34

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA640320.360601513870842No Hit
GGCGCCAGTGAAATACCACTACCTTTAAAAAAAAA616580.3472321361545536No Hit
GGCGCCAGTGAAATACCACTACCTTTATAAAAAAA426540.2402095354298928No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAA349060.1965760314089145No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTAAAAAA322810.18179312639406314No Hit
GCGGAGAATTTGGACAAACTTGGTCATTAAAAAAA299790.16882922264389638No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAA282040.15883316306242548No Hit
AGCGGAGAATTTGGACAAACTTGGTCAAAAAAAAA279050.15714931978644814No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATTAAAAA262800.1479979976343973No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAAA257500.14501325871711304No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA243870.13733741127511595No Hit
TAGCGGAGAATTTGGACAAACTTGGTCAAAAAAAA237280.1336261981685304No Hit
ATGATTAATAGGGACGGTCGGGGGCAAAAAAAAAA220630.12424961270196756No Hit
AGCGGAGAATTTGGACAAACTTGGTCATAAAAAAA210600.11860113509057867No Hit
GATTAAGCCTTTGTTGTCTGATTTGTAAAAAAAAA194190.10935970761272304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)