FastQCFastQC Report
Tue 27 Jun 2023
SRR788075.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR788075.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20290334
Total Bases710.1 Mbp
Sequences flagged as poor quality0
Sequence length35
%GC33

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA2865811.4124015898407587No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTAAAAAA1349180.6649373046298794No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAAA1292570.6370373203319374No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATTAAAAA1258340.6201672185386402No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAA1229550.6059781963175175No Hit
GCCAAGGACGTTTTCATTAATCAAGAACGAAAAAA1109940.5470289449153474No Hit
GCGGAGAATTTGGACAAACTTGGTCATTAAAAAAA1095120.5397249744632099No Hit
GCCAAGGACGTTTTCATTAATCAAGAACAAAAAAA891940.43958862382452646No Hit
TAGCGGAGAATTTGGACAAACTTGGTCAAAAAAAA772330.3806393724223564No Hit
AGCGGAGAATTTGGACAAACTTGGTCAAAAAAAAA747900.36859915662305015No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAA739400.36440996979152734No Hit
TCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAA683880.33704718709903936No Hit
AGCGGAGAATTTGGACAAACTTGGTCATAAAAAAA660830.32568709810296864No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATAAAAAA640500.3156675488929852No Hit
ATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAAAA555600.27382496512871596No Hit
ATGATTAATAGGGACGGTCGGGGGCAAAAAAAAAA519580.256072669873251No Hit
TGCGGAGAATTTGGACAAACTTGGTCATTAAAAAA503830.24831035309719396No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA499750.246299543418063No Hit
GGCGCCAGTGAAATACCACTACCTTTAAAAAAAAA453140.22332801421603016No Hit
TGTACAACGGGGTATTGTAAGCAGTAGAGTAAAAA420090.2070394701240502No Hit
GTTTAGTGGTAAAATCCAAAAAAAAAAAAAAAAAA410360.20224408331573052No Hit
GCGGAGAATTTGGACAAACTTGGTCAAAAAAAAAA400150.1972121306628072No Hit
GCGGAGAATTTGGACAAACTTGGTCATAAAAAAAA376060.18533948233676192No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCGAAAAA350390.17268813810556297No Hit
TAGCGGAGAATTTGGACAAACTTGGCCAAAAAAAA337900.16653249769077236No Hit
AGCGGAGAATTTGGACAAACTTGGCCAAAAAAAAA325010.1601797190721454No Hit
GGCGCCAGTGAAATACCACTACCTTTATAAAAAAA293430.1446156578792641No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTTAAAAA286130.14101788565925036No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAA279200.13760246627778527No Hit
GCGGAGAATTTGGACAAACTTGGTCATTTAAAAAA278760.13738561425356527No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAA265260.13073219987408785No Hit
GCCAAGGACGTTTTCATTAATCAAAAAAAAAAAAA264400.13030835273583963No Hit
TCCGTGATAGTTTAATGGTCAGAATGGGCAAAAAA249400.1229156700919758No Hit
ATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAAAA247840.12214683109701396No Hit
TTGTGGCGTCGCTGAACCATAGCAAAAAAAAAAAA240770.11866241334420617No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATTTAAAA240210.11838641985883526No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAAA237740.11716909145014567No Hit
TGTTAATAGATAATATACGGATCTTAATAAAAAAA216770.10683412111402404No Hit
TTTCGGTGCCCGAGTTGTAATTTGAAAAAAAAAAA211340.10415796999694535No Hit
ATGGCTTAGTGAGGCCTCAGGATCTGCCAAAAAAA210070.10353205619976487No Hit
TGCGGAGAATTTGGACAAACTTGGTCAAAAAAAAA207810.10241822534808938No Hit
TGTACAACGGGGTATTGTAAGCAGTAGAGCAAAAA204340.1007080514298089No Hit
GATTAAGCCTTTGTTGTCTGATTTGTAAAAAAAAA204270.10067355224413753No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)