FastQCFastQC Report
Tue 27 Jun 2023
SRR788076.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR788076.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20233740
Total Bases708.1 Mbp
Sequences flagged as poor quality0
Sequence length35
%GC33

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA2678101.3235813052851326No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAAAA1760440.8700517057153053No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTAAAAAA1728100.8540685014238594No Hit
GCCAAGGACGTTTTCATTAATCAAGAACGAAAAAA1479050.7309820132115961No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATTAAAAA1265580.6254800150639476No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAA1216680.6013124612651937No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAAAAA1205530.5958018636198745No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAAA1112290.5497204174809007No Hit
GCGGAGAATTTGGACAAACTTGGTCATTAAAAAAA1043520.5157326327213851No Hit
TGTACAACGGGGTATTGTAAGCAGTAGAGTAAAAA870270.4301083240172109No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA866050.42802269872005866No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAATA856420.4232633215609176No Hit
GCCAAGGACGTTTTCATTAATCAAGAACAAAAAAA831480.410937374899549No Hit
TCACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAA748720.3700353963231711No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAA670850.3315501731266686No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAATAA669030.33065068543927123No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAA668090.33018611487545063No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTTAAAAA623790.3082919914953933No Hit
AGCGGAGAATTTGGACAAACTTGGTCAAAAAAAAA607790.3003844074303613No Hit
AGCGGAGAATTTGGACAAACTTGGTCATAAAAAAA569140.2812826496732685No Hit
TTTGCTCGAATATATTAGCATGGAATAATAAAAAA566680.28006685862326985No Hit
ATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAAAA550950.2722927150393353No Hit
GGCGCCAGTGAAATACCACTACCTTTAAAAAAAAA477000.23574484993876565No Hit
GCGGAGAATTTGGACAAACTTGGTCATTTAAAAAA464520.22957693436804072No Hit
TAGCGGAGAATTTGGACAAACTTGGTCAAAAAAAA460010.22734798410970983No Hit
TTGCTCGAATATATTAGCATGGAATAATAAAAAAA452240.2235078635981287No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAA434510.2147452720060651No Hit
TGTACAACGGGGTATTGTAAGCAGTAGAGCAAAAA432480.21374199727781418No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATTTAAAA429660.21234828558635233No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATAAAAAA419510.20733191194509765No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCATA392830.19414601551665683No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCAAA376040.1858479944884139No Hit
ATGATTAATAGGGACGGTCGGGGGCAAAAAAAAAA372930.1843109578357733No Hit
TCCGTGATAGTTTAATGGTCAGAATGGGCAAAAAA372240.1839699432729688No Hit
GCGGAGAATTTGGACAAACTTGGTCAAAAAAAAAA372090.18389580967235913No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAAA367160.18145928533232117No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAA363310.17955652291667284No Hit
TGCGGAGAATTTGGACAAACTTGGTCATTAAAAAA356960.17641820049086326No Hit
GCGGAGAATTTGGACAAACTTGGTCATAAAAAAAA353920.1749157595185072No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAA323150.1597084869134426No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCGAAAAA306570.15151425292605322No Hit
GGCGCCAGTGAAATACCACTACCTTTATAAAAAAA278740.13775999889293825No Hit
ATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAAAA260140.12856743241733856No Hit
TTGCCAAGGACGTTTTCATTAATCAAGAACGAAAA256960.12699580008441344No Hit
TTGATGATTCATAATAACTTTTCGAATCGCAAAAA253860.12546370567181353No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATAAA249570.12334348469437682No Hit
GCCAAGGACGTTTTCATTAATCAAAAAAAAAAAAA244720.12094649827466401No Hit
TTTCGGTGCCCGAGTTGTAATTTGAAAAAAAAAAA244460.12081800003360724No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCAAAA241790.11949842194275502No Hit
GTCTAGTGGTATGATTCTCGCAAAAAAAAAAAAAA238280.11776369568848863No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATAA238100.11767473536775702No Hit
AGCGGAGAATTTGGACAAACTTGGCCAAAAAAAAA237060.11716074240352993No Hit
GTTTAGTGGTAAAATCCAACGAAAAAAAAAAAAAA234900.11609321855475063No Hit
CACGTTCTAGCATTCAAGGTCCCAAAAAAAAAAAA227200.11228769372345399No Hit
GGTACAACGGGGTATTGTAAGCAGTAGAGTAAAAA218450.10796323368788964No Hit
TCCGATATAGTGTAACGGCTATCACATCACAAAAA215470.10649044615577742No Hit
TTGTGGCGTCGCTGAACCATAGCAAAAAAAAAAAA207650.10262561444399307No Hit
TGCTCGAATATATTAGCATGGAATAATAGAAAAAA204030.10083652354927956No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)