FastQCFastQC Report
Tue 27 Jun 2023
SRR788077.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR788077.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20345135
Total Bases712 Mbp
Sequences flagged as poor quality0
Sequence length35
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTGCTCGAATATATTAGCATGGAATAATAGAATA7372413.6236721948514967No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAATAA5953592.926296630619556No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAAAA3657901.7979236805260816No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAAAAA2814691.3834707904371242No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA2555021.2558383122058419No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCATA1617280.79492222587857No Hit
GCCAAGGACGTTTTCATTAATCAAGAACGAAAAAA1382630.6795875279274383No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTAAAAAA1365390.6711137576624584No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAA1066350.5241302158968225No Hit
TTTGCTCGAATATATTAGCATGGAATAATAAAAAA994990.4890554916445627No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAACA972520.4780110822562741No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATAA959300.4715132143384647No Hit
TTGCTCGAATATATTAGCATGGAATAATAAAAAAA931730.4579620631664523No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATTAAAAA919240.45182300338631326No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCAAA888180.436556454405439No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAAA879220.43215245315403417No Hit
GCGGAGAATTTGGACAAACTTGGTCATTAAAAAAA878190.43164618961732126No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAA867880.42657863907022486No Hit
TGCTCGAATATATTAGCATGGAATAATAGAATAAA790290.38844175769784767No Hit
GCCAAGGACGTTTTCATTAATCAAGAACAAAAAAA776830.38182592546080424No Hit
TGTACAACGGGGTATTGTAAGCAGTAGAGTAAAAA769060.37800683062560164No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTTAAAAA767480.3772302321906441No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAA684280.3363359348561708No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAACAA645550.31729944283977474No Hit
ATTCCAGGGGGCATGCCTGTTTGAGCGTCATTTAA641030.31507778149419996No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCAAAA599790.2948075793058144No Hit
GTTTAGTGGTAAAATCCAAAAAAAAAAAAAAAAAA553320.27196673799411997No Hit
AGCGGAGAATTTGGACAAACTTGGTCAAAAAAAAA527320.2591872700770971No Hit
GTTGCTCGAATATATTAGCATGGAATAATAGAATA521010.25608579151723493No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATTTAAAA505920.24866878494539357No Hit
ATAAATCATTTGTATACGACTTAGATAAAAAAAAA467330.2297011054485507No Hit
GCCAAGGACGTTTTCATTAATCAAAAAAAAAAAAA456980.22461389418158198No Hit
AGCGGAGAATTTGGACAAACTTGGTCATAAAAAAA450740.2215468218814965No Hit
TTGCTCGAATATATTAGCATGGAATAAAAAAAAAA443070.21777687884597471No Hit
GCGGAGAATTTGGACAAACTTGGTCATTTAAAAAA441630.2170690929305704No Hit
TTTCCAGGGGGCATGCCTGTTTGAGCGTCATTTAA439870.21620402125618732No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAGTA439860.2161991060762192No Hit
GTCTAGTGGTATGATTCTCGCAAAAAAAAAAAAAA418390.20564621468473912No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAA412400.20270202188385575No Hit
ATGGCTTAGTGAGGCCTCAGGATCTGCTAAAAAAA395410.1943511311180781No Hit
GTTTAGTGGTAAAATCCAACGAAAAAAAAAAAAAA386350.1898979780669924No Hit
TGCTCGAATATATTAGCATGGAATAATAGAAAAAA374300.18397518620544911No Hit
TTGCTCGAATATATTAGCATGGAAAAAAAAAAAAA371540.18261859653425744No Hit
CTTGCTCGAATATATTAGCATGGAATAATAGAATA369000.1813701408223637No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATAAA366610.18019541280999118No Hit
GCTCGAATATATTAGCATGGAATAATAGAATAAAA363720.17877492579921442No Hit
GGCGCCAGTGAAATACCACTACCTTTAAAAAAAAA351370.17270467853862853No Hit
TTGCCAAGGACGTTTTCATTAATCAAGAACGAAAA346800.17045844129321336No Hit
GTCTAGTGGTATGATTCTCGAAAAAAAAAAAAAAA342700.1684432175062982No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAA341240.16772560123095767No Hit
TAGCGGAGAATTTGGACAAACTTGGTCAAAAAAAA340290.16725865913398952No Hit
TTGATGATTCATAATAACTTTTCGAATCGCAAAAA339910.16707188229520228No Hit
GAATATATTAGCATGGAATAATAGAATAAAAAAAA332830.16359193487779758No Hit
TGTACAACGGGGTATTGTAAGCAGTAGAGCAAAAA330460.16242703722536125No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCAAAAAA313320.1540024187600623No Hit
TAGCGGAGAATTTGGACAAACTTGGTCATAAAAAA306350.15057653832230652No Hit
ATGATTAATAGGGACGGTCGGGGGCAAAAAAAAAA297750.1463494835497528No Hit
TCCGTGATAGTTTAATGGTCAGAATGGGCAAAAAA292080.1435625765078482No Hit
GCGGAGAATTTGGACAAACTTGGTCATAAAAAAAA290820.1429432638318694No Hit
GCGGAGAATTTGGACAAACTTGGTCAAAAAAAAAA285150.14015635678996477No Hit
TTTGCTCGAATATATTAGCATGGAATAAAAAAAAA276780.136042351156677No Hit
CGAATATATTAGCATGGAATAATAGAATAAAAAAA273090.1342286497484534No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAGTAA269040.13223800186137866No Hit
TGCGGAGAATTTGGACAAACTTGGTCATTAAAAAA266380.13093056398986785No Hit
GTTTAGTGGTAAAATCCAACAAAAAAAAAAAAAAA256960.1263004644599311No Hit
GTTGCTCGAATATATTAGCATGGAATAATAGAAAA248780.12227984724603694No Hit
GAATGGCTTAGTGAGGCCTCAGGATCTGCCAAAAA236950.11646518934379153No Hit
AAATGGCTTAGTGAGGCCTCAGGATCTGCGAAAAA233200.11462199685575937No Hit
GGCGCCAGTGAAATACCACTACCTTTATAAAAAAA219810.10804057087849257No Hit
AGCATGGAATAATAGAATAAAAAAAAAAAAAAAAA218100.10720007510394991No Hit
GTCTAGTCGGTTATGGCATCTGAAAAAAAAAAAAA204470.10050068480744906No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)