FastQCFastQC Report
Fri 7 Jul 2023
SRR7883717.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883717.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.9 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG134371.3437No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT78040.7804No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT66570.6657No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT62920.6292No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT60870.6087No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC52570.5257000000000001No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT45690.45690000000000003No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT44080.44079999999999997No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT42130.42129999999999995No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG40200.402No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC38280.3828No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC37950.3795No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC37400.374No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC36790.3679No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC35470.35469999999999996No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCG32350.3235No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT31910.3191No Hit
AAAAGCATCTGGCCTACACCCAGAAGATT30620.3062No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT30580.3058No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGT29830.2983No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT29480.2948No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG29190.2919No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGG27980.2798No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC27190.27190000000000003No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC26420.2642No Hit
TCCCATATGGTCTAGCGGTTAGGATTCCTGGT23120.2312No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGAT22550.2255No Hit
TATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG21910.2191No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC21350.21350000000000002No Hit
ATTGGTGGTTCAGTGGTAGAATTCTCGCC19730.1973No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC19730.1973No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT19570.19569999999999999No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG19330.1933No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGC19070.1907No Hit
TTTCCATAGTGTAGCGGTTATCACGTCTGCT18900.189No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT18470.1847No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT18440.18439999999999998No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGC17940.1794No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT17910.1791No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG17580.1758No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCG17470.1747No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC17300.173No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT17220.1722No Hit
CCGCCGCTGGTGTAGTGGTATCATGCAAGATT17190.1719No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC17160.1716No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCG16990.1699No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC16980.1698No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC16120.16119999999999998No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGAT16100.161No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGAT15920.1592No Hit
CCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT15400.154No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC15120.1512No Hit
AATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG14940.1494No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT14910.14909999999999998No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGA14600.146No Hit
TGCCGCTGGTGTAGTGGTATCATGCAAGATT14500.145No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG14120.1412No Hit
TTCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG14050.1405No Hit
TCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG13810.1381No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCG13790.1379No Hit
TGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT13640.1364No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC13570.1357No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC13070.1307No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCG13040.13040000000000002No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC13030.1303No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG12980.1298No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT12960.1296No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT12900.129No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC12780.1278No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGC12630.1263No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC12560.1256No Hit
TCCGCTGGTGTAGTGGTATCATGCAAGATT12290.12290000000000001No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC12110.1211No Hit
ATTCTTGCGACCCGGGTTCGGTTCCCGGGCGGCG12070.1207No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAA11840.11839999999999999No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC11810.1181No Hit
TTCCCTGGTGGTCTAGTGGTTAGGATTCGGCG11740.11739999999999999No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCG11710.1171No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT11700.117No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC11640.1164No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC11360.1136No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC11220.1122No Hit
ATTGGTGGTTCAGTGGTAGAATTCTCG11130.11130000000000001No Hit
AACCTAGACTTACAAGTCAAAGTAAAAT10910.1091No Hit
TTCCCACATGGTCTAGCGGTTAGGATTCCTGGT10730.10729999999999999No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC10680.10679999999999999No Hit
GCGAAAGGTCCCCGGTTCGTAACCGGGCGGAAA10560.10560000000000001No Hit
GCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC10120.10120000000000001No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATTT10070.10070000000000001No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGC10040.10039999999999999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)