FastQCFastQC Report
Fri 7 Jul 2023
SRR7883718.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883718.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.9 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG136871.3687No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT127871.2787No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT86480.8647999999999999No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT82610.8261No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT67950.6795No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC63950.6395No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC49910.4991No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT45120.45120000000000005No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG41800.418No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC38440.3844No Hit
ACCTCTAGCATTACAAGTATTAGAGGC37160.3716No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC37050.3705No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC36350.36350000000000005No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCG33330.3333No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG32980.32980000000000004No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGT32150.3215No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC32050.3205No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT30900.309No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT30260.3026No Hit
AAAAGCATCTGGCCTACACCCAGAAGATT28510.28509999999999996No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC27320.2732No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC27320.2732No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC27290.27290000000000003No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT26640.2664No Hit
CCGCCGCTGGTGTAGTGGTATCATGCAAGATT26640.2664No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT26270.2627No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGG25660.2566No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC24230.2423No Hit
TTTCCATAGTGTAGCGGTTATCACGTCTGCT23670.23670000000000002No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC22780.2278No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT22600.22599999999999998No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGC22510.2251No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGAT21880.2188No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG21600.216No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC21270.2127No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGAT21190.21189999999999998No Hit
TCCCATATGGTCTAGCGGTTAGGATTCCTGGT20810.2081No Hit
TGCCGCTGGTGTAGTGGTATCATGCAAGATT20760.2076No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGC19830.1983No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG19350.1935No Hit
TATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG19220.1922No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT18840.1884No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC18610.18610000000000002No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGAT18330.1833No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC16660.1666No Hit
ATTGGTGGTTCAGTGGTAGAATTCTCGCC16580.1658No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT16460.1646No Hit
TCCGCTGGTGTAGTGGTATCATGCAAGATT16290.1629No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGA15990.1599No Hit
CGTGATCGTATAGTGGTTAGTACTCTGCGT15300.153No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC15110.15109999999999998No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCG14990.14989999999999998No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC14840.1484No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCG14450.14450000000000002No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC14290.1429No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC14290.1429No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC14210.1421No Hit
TCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG14190.1419No Hit
CCCCGGATAGCTCAGTCGGTAGAGCATCAGAC14110.1411No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC14020.1402No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC13840.1384No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC13790.1379No Hit
GCGAAAGGTCCCCGGTTCGTAACCGGGCGGAAA13600.136No Hit
AATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG13590.1359No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT13580.1358No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCG13360.1336No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAA13230.1323No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATTT12910.1291No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC12380.1238No Hit
GCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC12190.12190000000000001No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT12110.1211No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC12080.1208No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGC12020.1202No Hit
ATTCTTGCGACCCGGGTTCGGTTCCCGGGCGGCG11990.11989999999999999No Hit
GCCGCTGGTGTAGTGGTATCATGCAAGATT11810.1181No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTC11700.117No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCT11700.117No Hit
TAGAGTGGCGCAGCGGAAGCGTGCTGGGC11420.1142No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTT11370.1137No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT11270.1127No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC11140.1114No Hit
CCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC10990.1099No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT10930.1093No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAAT10910.1091No Hit
TTCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG10790.10790000000000001No Hit
GGAGGCGTGGGTTCGAATCCCACTTCTGACAC10760.10759999999999999No Hit
TTCCCTGGTGGTCTAGTGGTTAGGATTCGGCG10600.106No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT10590.10590000000000001No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCAC10590.10590000000000001No Hit
CGCAGCAACCTCGGTTCGTATCCGAGTCACGG10510.10510000000000001No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC10250.10250000000000001No Hit
TTCCCACATGGTCTAGCGGTTAGGATTCCTGGT10240.10239999999999999No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCG10220.10219999999999999No Hit
GTCGCTGGTTCGTTTCCGGCTCGAAGGAC10170.10169999999999998No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGG10150.1015No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGC10030.1003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)