FastQCFastQC Report
Fri 7 Jul 2023
SRR7883719.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883719.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.4 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT95850.9585No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC76750.7675000000000001No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC68870.6887No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG65590.6558999999999999No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT63100.631No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT56540.5654No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC54630.5463No Hit
ACCTCTAGCATTACAAGTATTAGAGGC53930.5393No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC48540.4854No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC43170.4317No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT43090.43090000000000006No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT39570.39569999999999994No Hit
AAAAGCATCTGGCCTACACCCAGAAGATT36560.3656No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT36260.3626No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC33520.3352No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC33300.333No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT32490.3249No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC28170.2817No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT26670.2667No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGAT26310.2631No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG25610.2561No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT23610.23609999999999998No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT23270.23270000000000002No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC22630.22629999999999997No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCG20680.20679999999999998No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT20630.2063No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC20280.20279999999999998No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT20130.2013No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT19470.19469999999999998No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGA19060.1906No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC18570.1857No Hit
CCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT17810.1781No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC17700.17700000000000002No Hit
AAAACGATGCCGACTGGCGATGCGGCGGCGTT16300.163No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG15780.1578No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCG15370.1537No Hit
AACCTAGACTTACAAGTCAAAGTAAAAT15240.1524No Hit
AAAAGCATCTGGCCTACACCCAGAAGAT15220.1522No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT15170.1517No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC15120.1512No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC14830.1483No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC12610.1261No Hit
CCTCTAGCATTACAAGTATTAGAGGC12040.1204No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC12040.1204No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCC11960.1196No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT11440.1144No Hit
GACGAAGCCGAGCGCACGGGGTCGGCGGCGAT11210.1121No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG11120.1112No Hit
GGGGGGCCCGAGGTGGGATCCCGAGGCCTCTCC11110.1111No Hit
TCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC10960.1096No Hit
TATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG10670.1067No Hit
AGTTCAATTTTAAACTTGCTAAAAAAAC10560.10560000000000001No Hit
CCCCTCCGCGCGCCGGGTTTCGCCCCCGCGGCGTC10170.10169999999999998No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)