FastQCFastQC Report
Fri 7 Jul 2023
SRR7883720.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883720.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases34.9 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC91980.9198No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT88100.881No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC86050.8604999999999999No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG75120.7512No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT73150.7315No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT48720.48719999999999997No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC45090.4509No Hit
AAAAGCATCTGGCCTACACCCAGAAGATT44670.4467No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT42400.424No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT34850.3485No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT34020.3402No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT32650.3265No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGAT30190.3019No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC30000.3No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC26200.262No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT25700.257No Hit
ACCTCTAGCATTACAAGTATTAGAGGC25550.2555No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC25480.25479999999999997No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC25170.25170000000000003No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT24230.2423No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT23700.23700000000000002No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT23410.23410000000000003No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC23200.232No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC23190.2319No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC22010.2201No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG20580.20579999999999998No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCG19720.1972No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC18830.1883No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC18310.18309999999999998No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT17890.1789No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC16950.16949999999999998No Hit
AAAACGATGCCGACTGGCGATGCGGCGGCGTT16090.1609No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATTT15980.1598No Hit
CCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT15750.1575No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG14570.1457No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT14480.1448No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGT13900.13899999999999998No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC13870.1387No Hit
TGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCC13850.13849999999999998No Hit
TATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG13730.1373No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC13670.1367No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCG13180.1318No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC13180.1318No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCG13050.1305No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT12840.1284No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCG12630.1263No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG12560.1256No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT12380.1238No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC12350.1235No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG12300.123No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCC12260.12260000000000001No Hit
TTTCCATAGTGTAGCGGTTATCACGTCTGCT12130.1213No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCC11400.11399999999999999No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC10990.1099No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGC10580.10579999999999999No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC10570.1057No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT10280.1028No Hit
TCCCATATGGTCTAGCGGTTAGGATTCCTGGT10260.1026No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG10140.10139999999999999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)