FastQCFastQC Report
Fri 7 Jul 2023
SRR7883721.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883721.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases34.3 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC75390.7539No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC61850.6185No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT49840.49839999999999995No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT42890.4289No Hit
ATGTACACGGAGTCGACCCAACGCGA38250.3825No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT29700.297No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC28340.28340000000000004No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC28190.2819No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG26700.267No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC26270.2627No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT26050.2605No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC25500.255No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG25420.2542No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC21810.21810000000000002No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG21140.2114No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGA20360.2036No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT19310.1931No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC19310.1931No Hit
AGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC18500.185No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCT18430.1843No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATTT18280.1828No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT18250.1825No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC18190.1819No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT17370.1737No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT17330.17329999999999998No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC17200.172No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC16360.1636No Hit
ACCTCTAGCATTACAAGTATTAGAGGC16210.1621No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC15500.155No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC15330.15330000000000002No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC15240.1524No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC14920.1492No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCC13660.1366No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT13280.1328No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCG13210.1321No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC13140.13140000000000002No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCGT13090.13090000000000002No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT12920.1292No Hit
CGGGGCCCGGTGGGGGGCGGGGCGGACTGT12910.1291No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC12760.1276No Hit
AACCTAGACTTACAAGTCAAAGTAAAAT12630.1263No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC12570.1257No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCCGC12510.1251No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGC12370.1237No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC12320.1232No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGAC12070.1207No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT11750.11750000000000001No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC11550.1155No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC11400.11399999999999999No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG11320.1132No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC11320.1132No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCT11260.1126No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT11210.1121No Hit
ATGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC11060.1106No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT11000.11No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC10720.1072No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC10210.1021No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)