FastQCFastQC Report
Fri 7 Jul 2023
SRR7883722.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883722.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.9 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC94470.9447000000000001No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG56890.5689No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC55290.5529000000000001No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT49000.49No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT43200.432No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC34670.3467No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT32820.32820000000000005No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC30120.30119999999999997No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC26130.2613No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATTT25470.2547No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC25470.2547No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC22000.22No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCT21720.21719999999999998No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT20300.203No Hit
AGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC20230.2023No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCAC20140.20140000000000002No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT18470.1847No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC18190.1819No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCT17890.1789No Hit
ACCTCTAGCATTACAAGTATTAGAGGC17620.1762No Hit
GGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACC17470.1747No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC17090.1709No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG16910.1691No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCCGC16770.16770000000000002No Hit
CCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG16620.16620000000000001No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC16430.1643No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC16010.1601No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC15420.1542No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC15160.1516No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG14600.146No Hit
GCGCCGGGTTTCGCCCCCGCGGCGTCGGGC14470.1447No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT14470.1447No Hit
CGGGGCCCGGTGGGGGGCGGGGCGGACTGT14140.1414No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCG14040.1404No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC13340.1334No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC13270.1327No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC13240.13240000000000002No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT13130.1313No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC12800.128No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCC12520.1252No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT12040.1204No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT12040.1204No Hit
AACCTAGACTTACAAGTCAAAGTAAAAT11930.1193No Hit
GGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC11710.1171No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGAC11400.11399999999999999No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC11290.1129No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT11040.1104No Hit
CCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC10720.1072No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC10520.1052No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC10470.1047No Hit
ATGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC10420.1042No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC10280.1028No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC10180.1018No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT10140.10139999999999999No Hit
CCGGGGGCCCGAGGTGGGATCCCGAGGCCTCT10140.10139999999999999No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC10040.10039999999999999No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC10020.10020000000000001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)