FastQCFastQC Report
Fri 7 Jul 2023
SRR7883723.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883723.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.5 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTAAAGCATCTGGCCTACACCCAGAAGATT54680.5468No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC53630.5363No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT51640.5164No Hit
ACCTCTAGCATTACAAGTATTAGAGGC44630.4463No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC36870.3687No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT31870.31870000000000004No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC28220.2822No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG27550.2755No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG27160.2716No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT26920.2692No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC26870.2687No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT25510.2551No Hit
GCGCCGGGTTTCGCCCCCGCGGCGTCGGGC25470.2547No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT22300.22300000000000003No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC21750.21749999999999997No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC21740.2174No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT20760.2076No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC20370.20370000000000002No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT20230.2023No Hit
ATGTACACGGAGTCGACCCAACGCGA18140.1814No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC16750.1675No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATTT16460.1646No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT16090.1609No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT15920.1592No Hit
AAAAGCATCTGGCCTACACCCAGAAGATT15730.1573No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC15630.1563No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC15120.1512No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG14720.1472No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC14590.1459No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT13910.1391No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT13840.1384No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC13580.1358No Hit
CCTCTAGCATTACAAGTATTAGAGGC13480.1348No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCG13280.1328No Hit
AGAGCCACCTTACAAATAAGCGCTCTC13190.13190000000000002No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC13100.131No Hit
TCTTCTGGCGCCAAGCGTCCGTCCCGCG13090.13090000000000002No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT12930.1293No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCAC12890.1289No Hit
AACCTAGACTTACAAGTCAAAGTAAAAT12790.12789999999999999No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC12600.126No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTC12420.1242No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCC12380.1238No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC12180.12179999999999999No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT12100.121No Hit
AGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC12020.1202No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC12000.12No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG11950.11950000000000001No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC11920.11919999999999999No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGAT11590.1159No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC11530.1153No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC11520.1152No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC11160.1116No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCCGC10990.1099No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC10840.1084No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG10570.1057No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT10530.10529999999999999No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC10510.10510000000000001No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG10320.10319999999999999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)