FastQCFastQC Report
Fri 7 Jul 2023
SRR7883724.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883724.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.1 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC72380.7238No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT70270.7027No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC53170.5317No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT52720.5272No Hit
ACCTCTAGCATTACAAGTATTAGAGGC39190.39189999999999997No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG36020.3602No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT35820.3582No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC33950.3395No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT31210.3121No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC27060.2706No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC25220.2522No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC24940.2494No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATTT24260.2426No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT24010.24009999999999998No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC22400.22399999999999998No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG19950.19949999999999998No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT19930.1993No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG19860.1986No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC19500.19499999999999998No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT19450.19449999999999998No Hit
AACCTAGACTTACAAGTCAAAGTAAAAT18770.1877No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC17590.1759No Hit
GCGCCGGGTTTCGCCCCCGCGGCGTCGGGC17290.1729No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC17200.172No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT17050.17049999999999998No Hit
CCTCTAGCATTACAAGTATTAGAGGC16810.1681No Hit
AAAAGCATCTGGCCTACACCCAGAAGATT16630.1663No Hit
AGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC16480.1648No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC16130.1613No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC16110.1611No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC16090.1609No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC16010.1601No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT15430.15430000000000002No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT14940.1494No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT14870.1487No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC14620.1462No Hit
TCTTCTGGCGCCAAGCGTCCGTCCCGCG14590.1459No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC14390.1439No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC14080.1408No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT14060.1406No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC13890.1389No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCAC13210.1321No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT13000.13No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGAT12680.1268No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC12640.12639999999999998No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC12600.126No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC12490.12489999999999998No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC12480.1248No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC12380.1238No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG11880.1188No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT11220.1122No Hit
TCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT11120.1112No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC11070.11069999999999999No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCCGC10890.1089No Hit
TGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT10820.1082No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCG10620.1062No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT10610.10610000000000001No Hit
AGAGCCACCTTACAAATAAGCGCTCTC10500.105No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG10390.10389999999999999No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCC10360.1036No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)