FastQCFastQC Report
Fri 7 Jul 2023
SRR7883726.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883726.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.6 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG152441.5244No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT94800.9480000000000001No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT76660.7666000000000001No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC71650.7165No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC59340.5934No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT53840.5384No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCG52090.5209No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC46620.46620000000000006No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC46400.464No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG42550.4255No Hit
ACCTCTAGCATTACAAGTATTAGAGGC41520.4152No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG40800.40800000000000003No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC38380.3838No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC37540.3754No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT35760.35760000000000003No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT34760.3476No Hit
TTTCCATAGTGTAGCGGTTATCACGTCTGCT34070.3407No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGC30750.3075No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC30550.3055No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG29730.2973No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT27690.27690000000000003No Hit
ATTGGTGGTTCAGTGGTAGAATTCTCGCC26460.2646No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT26170.2617No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC25750.2575No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC25500.255No Hit
TGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT25010.25010000000000004No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGG25000.25No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG24490.24489999999999998No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT23520.2352No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT22790.22790000000000002No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC22580.2258No Hit
TATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG21280.21280000000000002No Hit
CCGCCGCTGGTGTAGTGGTATCATGCAAGATT21080.21080000000000002No Hit
TGCCGCTGGTGTAGTGGTATCATGCAAGATT20600.20600000000000002No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCG20310.20309999999999997No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC19730.1973No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCG19020.1902No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGAT18720.1872No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGAT18670.1867No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGC18530.1853No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC18000.18No Hit
CCCCGGATAGCTCAGTCGGTAGAGCATCAGAC17570.17570000000000002No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC17560.1756No Hit
TTCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG17450.1745No Hit
AAAAGCATCTGGCCTACACCCAGAAGATT17340.1734No Hit
TCCGCTGGTGTAGTGGTATCATGCAAGATT17330.17329999999999998No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAAT17170.1717No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC17160.1716No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCG16550.1655No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT16290.1629No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTC16100.161No Hit
TAGAGTGGCGCAGCGGAAGCGTGCTGGGC15810.1581No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGA15660.1566No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC15650.1565No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTT15290.1529No Hit
AATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG14590.1459No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAA13950.13949999999999999No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC13870.1387No Hit
GTCGCTGGTTCGTTTCCGGCTCGAAGGAC13860.1386No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC13750.13749999999999998No Hit
TCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG13720.1372No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC13670.1367No Hit
GGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT13280.1328No Hit
CCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC13140.13140000000000002No Hit
ATTCTTGCGACCCGGGTTCGGTTCCCGGGCGGCG13110.13110000000000002No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCT13070.1307No Hit
CGTGATCGTATAGTGGTTAGTACTCTGCGT12970.1297No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC12940.12940000000000002No Hit
GCCGCTGGTGTAGTGGTATCATGCAAGATT12790.12789999999999999No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC12610.1261No Hit
GGAGGCGTGGGTTCGAATCCCACTTCTGACAC12450.1245No Hit
GCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC12390.12390000000000001No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGG12370.1237No Hit
TGATGTAGCTCAGTGGTAGAGCATGCTT12340.12340000000000001No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGAT12330.12329999999999999No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGC12320.1232No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGC12250.1225No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT12240.12240000000000001No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT12230.12229999999999999No Hit
CGAAAGGTCCCCGGTTCGTAACCGGGCGGAAA12200.122No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCCT11880.1188No Hit
GGAGGCGTGGGTTCGGATCCCACTTCTGACAC11850.11850000000000001No Hit
GCGAAAGGTCCCCGGTTCGTAACCGGGCGGAAA11790.11789999999999999No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC11780.1178No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGC11720.11720000000000001No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC11710.1171No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC11650.1165No Hit
TCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG11520.1152No Hit
TCCCCGCGGGGCCCCGTCGTCCCCCGCGTCGT11420.1142No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC11390.1139No Hit
CCCCCGCACAGGTTCGTATCCTGTTCGTGACG11360.1136No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGA11360.1136No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT10990.1099No Hit
TTCCCTGGTGGTCTAGTGGTTAGGATTCGGCG10920.1092No Hit
ATTCTTGCGACCCGGGTTCGATTCCCGGGCGGCG10580.10579999999999999No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAA10300.10300000000000001No Hit
TTTCCATAGTGTAGCGGTTATCACGTCTGCTT10030.1003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)