FastQCFastQC Report
Fri 7 Jul 2023
SRR7883727.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883727.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.8 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG168281.6827999999999999No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT73720.7372No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT65250.6525000000000001No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT61610.6161No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC55330.5533No Hit
TGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT54800.5479999999999999No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC52400.524No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC50880.5087999999999999No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT48810.4881No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCG47580.4758No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC41590.41590000000000005No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC40690.4069No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC38260.3826No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC35960.3596No Hit
TCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT34660.34659999999999996No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT34500.345No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG30590.3059No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGC29620.29619999999999996No Hit
TTTCCATAGTGTAGCGGTTATCACGTCTGCT29450.29450000000000004No Hit
TATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG28940.2894No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC27900.27899999999999997No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC25270.25270000000000004No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT25180.25179999999999997No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT24760.2476No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC24400.244No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG24380.24380000000000002No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT23950.2395No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC22380.2238No Hit
ACCTCTAGCATTACAAGTATTAGAGGC22050.2205No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC21560.21559999999999999No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG21150.21150000000000002No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC20540.20539999999999997No Hit
AATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG19350.1935No Hit
TTCCCGGGGAGCCCGGCGGGTGCCGGCGCGGG18700.187No Hit
AAAAGCATCTGGCCTACACCCAGAAGATT18580.1858No Hit
ATTGGTGGTTCAGTGGTAGAATTCTCGCC18500.185No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAA18270.1827No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT17910.1791No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC17790.1779No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGG17520.17520000000000002No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC17360.1736No Hit
CCGCCGCTGGTGTAGTGGTATCATGCAAGATT17280.17279999999999998No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG17180.17179999999999998No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT16490.16490000000000002No Hit
GGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT15930.1593No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG15740.1574No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC15680.1568No Hit
GCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC15620.1562No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT15610.15610000000000002No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGAT15410.15410000000000001No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC15330.15330000000000002No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC15120.1512No Hit
CCCCGGATAGCTCAGTCGGTAGAGCATCAGAC14880.1488No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGT14650.1465No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTC14650.1465No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC14560.1456No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCG14260.1426No Hit
ATTCTTGCGACCCGGGTTCGGTTCCCGGGCGGCG14190.1419No Hit
TGCCGCTGGTGTAGTGGTATCATGCAAGATT14040.1404No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCG14020.1402No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT14020.1402No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGC13890.1389No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT13650.13649999999999998No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC13400.134No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTT13270.1327No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT12960.1296No Hit
TCCGCTGGTGTAGTGGTATCATGCAAGATT12920.1292No Hit
TAGAGTGGCGCAGCGGAAGCGTGCTGGGC12800.128No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC12720.12719999999999998No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC12390.12390000000000001No Hit
GCGAAAGGTCCCCGGTTCGTAACCGGGCGGAAA12360.12359999999999999No Hit
GGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT12320.1232No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTATGGGAAC12280.12279999999999999No Hit
GTCGCTGGTTCGTTTCCGGCTCGAAGGAC12260.12260000000000001No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT12010.1201No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC11870.11869999999999999No Hit
TCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG11820.11820000000000001No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGA11760.1176No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC11460.11460000000000001No Hit
ATTCTTGCGACCCGGGTTCGATTCCCGGGCGGCG11430.11429999999999998No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGG11300.11299999999999999No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC11260.1126No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC11230.11230000000000001No Hit
CGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT11170.1117No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGC10940.1094No Hit
TCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC10870.1087No Hit
CGTGATCGTATAGTGGTTAGTACTCTGCGT10740.10740000000000001No Hit
CCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC10530.10529999999999999No Hit
GGAGGCGTGGGTTCGGATCCCACTTCTGACAC10360.1036No Hit
GGAGGCGTGGGTTCGAATCCCACTTCTGACAC10270.10269999999999999No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCCT10250.10250000000000001No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC10250.10250000000000001No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGC10180.1018No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCG10100.101No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGAT10070.10070000000000001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)