FastQCFastQC Report
Fri 7 Jul 2023
SRR7883728.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883728.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.9 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC102601.026No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT64650.6465000000000001No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC60610.6061000000000001No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC42340.4234No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC42200.422No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT38420.3842No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCT37240.3724No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC36910.3691No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG30830.30829999999999996No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATTT28360.2836No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC27130.2713No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT26210.2621No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCT24360.24359999999999998No Hit
AGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC23730.2373No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT22530.22529999999999997No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC22490.22490000000000002No Hit
CCGGGGGCCCGAGGTGGGATCCCGAGGCCTCT22090.2209No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC20510.20509999999999998No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC20310.20309999999999997No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC20280.20279999999999998No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC19700.197No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC18930.1893No Hit
ACCTCTAGCATTACAAGTATTAGAGGC18810.18810000000000002No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG18310.18309999999999998No Hit
CGGGCGGGCGTCCCGCGCGTGTGGGGGGAAC17600.17600000000000002No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC17560.1756No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCAC17370.1737No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT17090.1709No Hit
CGGGGCCCGGTGGGGGGCGGGGCGGACTGT16150.16149999999999998No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC15610.15610000000000002No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCT15520.1552No Hit
GCGCCGGGTTTCGCCCCCGCGGCGTCGGGC15510.15510000000000002No Hit
TCGGGGGCCCGAGGTGGGATCCCGAGGCCTCT15420.1542No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC15210.1521No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC15160.1516No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGAC14830.1483No Hit
GGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC14580.1458No Hit
CGGGGGCCCGAGGTGGGATCCCGAGGCCTCT14330.1433No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC14030.1403No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCCGC13910.1391No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC13280.1328No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAA13120.1312No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT13070.1307No Hit
CCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC13060.13060000000000002No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC12960.1296No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT12840.1284No Hit
CCCCGGATAGCTCAGTCGGTAGAGCATCAGAC12740.12739999999999999No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT12720.12719999999999998No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAA12490.12489999999999998No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG12490.12489999999999998No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT12280.12279999999999999No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT12230.12229999999999999No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC12110.1211No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG11980.1198No Hit
CAGAGTGGCGCAGCGGAAGCGTGCTGGGC11700.117No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT11610.1161No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCG11450.11449999999999999No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC11320.1132No Hit
CGCGGGGCCTCGCTCCACCCCCCCATCGCCTCT10970.1097No Hit
AACCTAGACTTACAAGTCAAAGTAAAAT10960.1096No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCC10940.1094No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTATGGGAAC10830.1083No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC10810.10809999999999999No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGC10720.1072No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT10680.10679999999999999No Hit
ATGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC10520.1052No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAA10410.1041No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC10350.1035No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC10290.10289999999999999No Hit
TCTTCTGGCGCCAAGCGTCCGTCCCGCG10160.1016No Hit
CGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC10020.10020000000000001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)