FastQCFastQC Report
Fri 7 Jul 2023
SRR7883729.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883729.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.5 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT135021.3502No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC74140.7414No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC68310.6831No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT63840.6384No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCAC55630.5563No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC50340.5034000000000001No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG48090.4809No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC47790.47790000000000005No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC38040.3804No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC36800.368No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGAC28660.2866No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC28530.2853No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT28340.28340000000000004No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC28280.2828No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC28200.28200000000000003No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC28020.2802No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC27700.27699999999999997No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC27620.2762No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGAT27250.2725No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC26760.2676No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT26700.267No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC26540.2654No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC26440.2644No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG25540.25539999999999996No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT25070.25070000000000003No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCAC25020.2502No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT24860.2486No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG24680.24680000000000002No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC23790.2379No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCA23560.2356No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG22970.2297No Hit
GCCGTGATCGTATAGTGGTTAGTACTCTGCG21890.21889999999999998No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT21640.2164No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC21280.21280000000000002No Hit
CCCCGGATAGCTCAGTCGGTAGAGCATCAGAC21190.21189999999999998No Hit
CAGAGTGGCGCAGCGGAAGCGTGCTGGGC19300.193No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAA19060.1906No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC18920.1892No Hit
TCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC17490.1749No Hit
GCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC17470.1747No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG17460.1746No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATCAGAC17230.17229999999999998No Hit
GCGAGAGGTAGCGGGATCGTTGCCCGCATCCTCCAC16190.1619No Hit
CCGCCGCTGGTGTAGTGGTATCATGCAAGATT15930.1593No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCA15620.1562No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC15620.1562No Hit
GCGCCGGGTTTCGCCCCCGCGGCGTCGGGC15130.1513No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGT15100.151No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTATGGGAAC14940.1494No Hit
CGTGATCGTATAGTGGTTAGTACTCTGCGT14910.14909999999999998No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT14760.1476No Hit
CTTTCCGTAGTGTAGTGGTTATCACGTTCGCC14740.1474No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC14300.14300000000000002No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGC14220.14220000000000002No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATTT13990.1399No Hit
TGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT13190.13190000000000002No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAA13160.1316No Hit
ACCTCTAGCATTACAAGTATTAGAGGC12970.1297No Hit
ATTGGTGGTTCAGTGGTAGAATTCTCGCC12920.1292No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAA12860.1286No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT12860.1286No Hit
TCCCATATGGTCTAGCGGTTAGGATTCCTGGT12810.1281No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCG12600.126No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC12440.12440000000000001No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCT12370.1237No Hit
CCCGGCTAGCTCAGTCGGTAGAGCATGGGAC12360.12359999999999999No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC12260.12260000000000001No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC12260.12260000000000001No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGC12240.12240000000000001No Hit
CGCGGGGCCTCGCTCCACCCCCCCATCGCCTCT12170.1217No Hit
TCAGAGTGGCGCAGCGGAAGCGTGCTGGGC12150.1215No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGC11740.11739999999999999No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGC11720.11720000000000001No Hit
CCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC11470.1147No Hit
CGGGATGTAGCTCAGTGGTAGAGCATGCTT11410.11410000000000001No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC11410.11410000000000001No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGA11390.1139No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG11370.1137No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC11080.11080000000000001No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGC10990.1099No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCA10840.1084No Hit
GGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT10690.10690000000000001No Hit
AGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC10680.10679999999999999No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCA10620.1062No Hit
TGCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC10340.10339999999999999No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCG10280.1028No Hit
GCGAAAGGTCCCCGGTTCGTAACCGGGCGGAAA10080.1008No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCT10050.1005No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)