FastQCFastQC Report
Fri 7 Jul 2023
SRR7883730.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883730.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.5 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC98510.9851000000000001No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC64090.6409No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATT58350.5835No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT48720.48719999999999997No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT41280.41279999999999994No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC41080.41079999999999994No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT29560.2956No Hit
CCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGG28750.2875No Hit
ACCTCTAGCATTACAAGTATTAGAGGC28630.2863No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC28130.2813No Hit
TAACCTAGACTTACAAGTCAAAGTAAAAT27860.27859999999999996No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG27180.2718No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTCC27160.2716No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCC24440.2444No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT23970.23969999999999997No Hit
TCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGT22880.2288No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT22420.2242No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC22290.22290000000000001No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC21680.2168No Hit
AGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC21430.2143No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT20560.2056No Hit
AAGTTCAATTTTAAACTTGCTAAAAAAAC20430.2043No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC20150.20149999999999998No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGATTT19010.1901No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG17820.1782No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT17130.17129999999999998No Hit
AACCTAGACTTACAAGTCAAAGTAAAAT16760.1676No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCCGC16480.1648No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGAT16430.1643No Hit
TCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC16270.1627No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC16160.1616No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC15580.1558No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC14760.1476No Hit
ACCTCACCCCGAGTGTTACAGCCCTCCGGCC14680.14679999999999999No Hit
AAAAGCATCTGGCCTACACCCAGAAGATT14130.1413No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT13830.13829999999999998No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGC13430.1343No Hit
CCGTGGCGCAATGAAGGTGAAGGGCCCCG13060.13060000000000002No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC12970.1297No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC12870.12869999999999998No Hit
ATGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC12530.1253No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC12180.12179999999999999No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC11800.11800000000000001No Hit
AAAACGATGCCGACTGGCGATGCGGCGGCGTT11530.1153No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC11420.1142No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCT11380.11379999999999998No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC11340.1134No Hit
TCTTCTGGCGCCAAGCGTCCGTCCCGCG11220.1122No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT11220.1122No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC11190.1119No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT11050.11050000000000001No Hit
TTCCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCTC10810.10809999999999999No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC10740.10740000000000001No Hit
CCGGCCGTGCCGGTGGCGGCGGATCTTTCCCGCT10630.10629999999999999No Hit
TCGTCCCCGCTCGGCGGGGTCCCCGCGTCGTC10620.1062No Hit
GGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC10520.1052No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC10320.10319999999999999No Hit
ATTAAAGCATCTGGCCTACACCCAGAAGAT10260.1026No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC10110.1011No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC10030.1003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)