FastQCFastQC Report
Fri 7 Jul 2023
SRR7883746.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883746.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases38 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC69

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCT445264.4526No Hit
GGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTGG383323.8331999999999997No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC334503.345No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTG286422.8642000000000003No Hit
GCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTGGA216192.1619No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC149361.4936No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTGGA132251.3225No Hit
CGGGGCCCGGTGGGGGGCGGGGCGGACTGTTGGAATTC77680.7767999999999999No Hit
TCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATTGGA56690.5669000000000001No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCTG50860.5086No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCTGGA50850.5085000000000001No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCTG44200.44200000000000006No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACTGGAAT43180.43179999999999996No Hit
GGGGGCCCGGTGGGGGGCGGGGCGGACTGTTGGAATTC38020.3802No Hit
GGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTTG35050.3505No Hit
TCGGGGCCCGGTGGGGGGCGGGGCGGACTGTTGGAATT35050.3505No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCTGG32250.3225No Hit
TCTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCC32140.32139999999999996No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCT30060.3006No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTT28210.2821No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCGT27130.2713No Hit
CGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTGGAA24340.2434No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCTG22250.2225No Hit
GGGGCCCGGTGGGGGGCGGGGCGGACTGTTGGAATTCT21150.21150000000000002No Hit
GGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCT20710.2071No Hit
CGACGAAGCCGAGCGCACGGGGTCGGCGGCGATTGGAA20150.20149999999999998No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCT19890.1989No Hit
CCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATTGGA18970.1897No Hit
GCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTTGG18520.1852No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA18430.1843No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTGG18120.1812No Hit
GGCCCCCGGTGGGGCGGGGGGCCCGGACACTGGAATTC18060.1806No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGTGCCGCCGCCCT17650.17650000000000002No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCTGGAA14290.1429No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCTGG14270.14270000000000002No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCTGGAA14090.1409No Hit
GGGCGCGCGCCGCGGCTGGACGAGGTGCCGCCGCCCTG13530.1353No Hit
GCGACGAAGCCGAGCGCACGGGGTCGGCGGCGATTGGA13320.1332No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGTGCCGCCGCCC12550.1255No Hit
TGGGTGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCT12470.1247No Hit
TGGGGCCCGGTGGGGGGCGGGGCGGACTGTTGGAATTC11830.1183No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCCTGGAA11750.11750000000000001No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCT11570.1157No Hit
GGCGCGCGCCGCGGCTGGACGAGGTGCCGCCGCCCTGG10950.1095No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG10800.108No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCGTGGA10700.107No Hit
TGGGCGCGCACCGCGGCTGGACGAGGCGCCGCCGCCCT10350.1035No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCTG10280.1028No Hit
GGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCCGG10190.10189999999999999No Hit
GCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTGGAA10120.10120000000000001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)