FastQCFastQC Report
Fri 7 Jul 2023
SRR7883747.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883747.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases38 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC65

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACATGGAA193101.931No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGATGGAATT136641.3664No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACTGGAAT130431.3043No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCT103671.0367No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC56070.5607No Hit
CGGGGCCCGGTGGGGGGCGGGGCGGACTGTTGGAATTC52200.522No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCTG49020.4902No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCCT48790.48789999999999994No Hit
GGGGGCCCGGTGGGGGGCGGGGCGGACTGTTGGAATTC42880.4288No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA39880.39880000000000004No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCTGGAATT39690.39690000000000003No Hit
CGGGCGGGCGTGGGGGTGGGGGCCGGGCCGCCTGGAAT33760.3376No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACATGGA32260.3226No Hit
GGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTGG30590.3059No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCTGG29380.2938No Hit
CGGGCGGGCGTGGGGGTGGGGGCCGGGCCGCTGGAATT28420.2842No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC27960.27959999999999996No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTG27860.27859999999999996No Hit
CCGGGGGCCCGAGGTGGGATCCCGAGGCCTCTTGGAAT27200.272No Hit
TGGGCGGGCGTGGGGGTGGGGGCCGGGCCGCCTGGAAT26740.2674No Hit
AGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACACTGGA26590.26589999999999997No Hit
GGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTT26170.2617No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATTTGGAAT25680.2568No Hit
GGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTTG25410.2541No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGATGGAAT24520.24520000000000003No Hit
TAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGACTGGAA24250.2425No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGATGGAATT22750.2275No Hit
TCGGGGCCCGGTGGGGGGCGGGGCGGACTGTTGGAATT22000.22No Hit
GGGGCCCGGTGGGGGGCGGGGCGGACTGTTGGAATTCT21340.2134No Hit
CCTCCCCGCGTCCGGCGCTCCGGCGGCGGGCGCGGGGG20460.2046No Hit
TGGGCGGGCGTGGGGGTGGGGGCCGGGCCGCTGGAATT19240.1924No Hit
CGGGGCCCGGTGGGGGGCGGGGCGGACTGTCCTGGAAT18650.1865No Hit
GGGCGGGCGTGGGGGTGGGGGCCGGGCCGCCTGGAATT18490.1849No Hit
GGGGCGGGCGTGGGGGTGGGGGCCGGGCCGCCTGGAAT17050.17049999999999998No Hit
GCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTGGA16940.1694No Hit
GGCGGGCGTGGGGGTGGGGGCCGGGCCGCCTGGAATTC16860.1686No Hit
CGGGGCCCGGTGGGGGGCGGGGCGGACTGTCTGGAATT16410.16410000000000002No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCT15130.1513No Hit
GGGCGGGCGTGGGGGTGGGGGCCGGGCCGCTGGAATTC14860.14859999999999998No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGCTGGAATT14750.1475No Hit
GCGGGCGTGGGGGTGGGGGCCGGGCCGCCTGGAATTCT14740.1474No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGATGGA14420.1442No Hit
GGGGGCCCGGTGGGGGGCGGGGCGGACTGTCCTGGAAT13870.1387No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCTG13820.1382No Hit
GCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCCTTGG13820.1382No Hit
TGGGGCCCGGTGGGGGGCGGGGCGGACTGTTGGAATTC13680.1368No Hit
GGGGCGGGCGTGGGGGTGGGGGCCGGGCCGCTGGAATT13630.1363No Hit
CCCCCCGCCGGGTCCGCCCCCCGGGCCGCGGTTTGGAA13170.1317No Hit
GGGGGCCCGGTGGGGGGCGGGGCGGACTGTCTGGAATT13110.13110000000000002No Hit
TCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCC12710.1271No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTTGG12410.12409999999999999No Hit
CTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCT11560.1156No Hit
CGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGACCCTG11390.1139No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGATGGAATT11270.1127No Hit
CGGGGGCCCGAGGTGGGATCCCGAGGCCTCTTGGAATT10930.1093No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGCGCTG10840.1084No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGACTGGAAT10680.10679999999999999No Hit
TCAGCGGGCCCCCGGTGGGGCGGGGGGCCCGGATGGAA10100.101No Hit
TCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGGG10070.10070000000000001No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCATGG10030.1003No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)