FastQCFastQC Report
Fri 7 Jul 2023
SRR7883748_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883748_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases36.6 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC70

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC574325.7432No Hit
CGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC346123.4612No Hit
TGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC326693.2668999999999997No Hit
TCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC179781.7978No Hit
CCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC150791.5079No Hit
GCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC129581.2958No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG128291.2829No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT128131.2812999999999999No Hit
TTTCTCTCGGGGCCACGCGCGCGTCCCCCGAAG104651.0465No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCT102891.0289No Hit
TTCTCTCGGGGCCACGCGCGCGTCCCCCGAAG58380.5838No Hit
TCCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC55150.5515No Hit
GGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC50790.5079No Hit
CGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG47060.4706No Hit
CGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG46280.4628No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC46130.4613No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGA44020.4402No Hit
TGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG43290.43290000000000006No Hit
TAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGC42370.4237No Hit
GGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC41400.414No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC32670.3267No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC31680.31679999999999997No Hit
CCCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC31130.31129999999999997No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC25170.25170000000000003No Hit
AGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGC24860.2486No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCC22360.22360000000000002No Hit
GCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC20000.2No Hit
TCTGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC19920.1992No Hit
GGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT19770.19770000000000001No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGTT19680.1968No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC19300.193No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC19020.1902No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT18910.18910000000000002No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACT18790.1879No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT18360.18359999999999999No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCC17830.17830000000000001No Hit
CCCGGCTAGCTCAGTCGGTAGAGCATGGGAC17810.1781No Hit
CATGGGTGGTTCAGTGGTAGAATTCTCGCCT17150.17149999999999999No Hit
CTGTCCCCGCCGGCGGGCCGCCCCCCCCTC16840.1684No Hit
CTCTCGGGGCCACGCGCGCGTCCCCCGAAG16320.1632No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT16040.1604No Hit
GGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG15830.1583No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGAC15480.1548No Hit
ACGCGGGAGGCCCGGGTTCGTTTCCCGGCCCATGCA14130.1413No Hit
GCCTGGGTAGCTCAGTCGGTAGAGCATCAGAC14090.1409No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATCAGAC12580.1258No Hit
AGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC12420.1242No Hit
CGCGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC12220.1222No Hit
CTGTCCCCGCCGGCGGGCCGCCCCCCCCTCC12210.12210000000000001No Hit
TAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCC12070.1207No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC11760.1176No Hit
TTTCTCTCGGGGCCACGCGCGCGTCCCCCGAA11610.1161No Hit
GTGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC11570.1157No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGC11560.1156No Hit
TCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG11400.11399999999999999No Hit
CTGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC11010.1101No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT10990.1099No Hit
GGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG10920.1092No Hit
CTGTCCCCGCCGGCGGGCCGCCCCCCCCT10840.1084No Hit
TCAGAGTGGCGCAGCGGAAGCGTGCTGGGC10630.10629999999999999No Hit
GCCTGGATAGCTCAGTCGGTAGAGCATCAGAC10100.101No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)