FastQCFastQC Report
Fri 7 Jul 2023
SRR7883749_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883749_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases36.2 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC72

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC731657.3165No Hit
TGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC574495.7449No Hit
CGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC359553.5955No Hit
TCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC234362.3436No Hit
CCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC159541.5954No Hit
GCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC158011.5800999999999998No Hit
TTTCTCTCGGGGCCACGCGCGCGTCCCCCGAAG125331.2533No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCT108951.0895No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT93410.9341No Hit
GGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC71570.7157No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG68470.6847No Hit
TTCTCTCGGGGCCACGCGCGCGTCCCCCGAAG65450.6545No Hit
TCCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC65360.6536No Hit
CGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG53740.5374No Hit
TGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG50630.5063No Hit
GGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC48910.48910000000000003No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC47190.4719No Hit
CGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG37240.3724No Hit
CCCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC35650.3565No Hit
TAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGC32700.327No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC30380.3038No Hit
CTCTCGGGGCCACGCGCGCGTCCCCCGAAG27300.27299999999999996No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC25330.2533No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC23940.23939999999999997No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCC23790.2379No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC23740.23739999999999997No Hit
AGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC22640.2264No Hit
TCTGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC22170.22169999999999998No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACT21040.2104No Hit
CTGTCCCCGCCGGCGGGCCGCCCCCCCCTC20550.2055No Hit
GTGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC19960.1996No Hit
AGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGC19900.199No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC19140.1914No Hit
GGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT18170.1817No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT17980.1798No Hit
CATGGGTGGTTCAGTGGTAGAATTCTCGCCT17530.1753No Hit
TTTCTCTCGGGGCCACGCGCGCGTCCCCCGAA17360.1736No Hit
GCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC16160.1616No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCC15960.1596No Hit
TCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG15340.1534No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATCAGAC14900.149No Hit
GCGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC14840.1484No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT14370.1437No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGTT14370.1437No Hit
CCCGGCTAGCTCAGTCGGTAGAGCATGGGAC14280.1428No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT14140.1414No Hit
GGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG13840.1384No Hit
GCCTGGGTAGCTCAGTCGGTAGAGCATCAGAC13660.1366No Hit
CGCGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC13390.1339No Hit
CTGTCCCCGCCGGCGGGCCGCCCCCCCCTCC12930.1293No Hit
GGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG12830.1283No Hit
CTGTCCCCGCCGGCGGGCCGCCCCCCCCT12080.1208No Hit
TCTCTCGGGGCCACGCGCGCGTCCCCCGAAG12070.1207No Hit
GCCTGGATAGCTCAGTCGGTAGAGCATCAGAC11940.11939999999999999No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGC11260.1126No Hit
TCAGAGTGGCGCAGCGGAAGCGTGCTGGGC10970.1097No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCCGGC10960.1096No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC10960.1096No Hit
GCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG10750.1075No Hit
TCTCTCTCGGGGCCACGCGCGCGTCCCCCGAAG10670.1067No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)