FastQCFastQC Report
Fri 7 Jul 2023
SRR7883750_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883750_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases35.6 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC770427.7042No Hit
CGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC610646.1064No Hit
CGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC542765.4276No Hit
TCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC199141.9914No Hit
GCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC193431.9343No Hit
CCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC174311.7430999999999999No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT121441.2144No Hit
GGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC109671.0967No Hit
TTCTCTCGGGGCCACGCGCGCGTCCCCCGAAG94210.9421No Hit
GCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC93860.9386No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCT90110.9011No Hit
TTTCTCTCGGGGCCACGCGCGCGTCCCCCGAAG83890.8389000000000001No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG79690.7969No Hit
CGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG68330.6833No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC65520.6552No Hit
TGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG64010.6401No Hit
TCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC42930.4293No Hit
CGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG42210.4221No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC38390.3839No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC36520.36519999999999997No Hit
TAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGC34430.3443No Hit
AGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGC32040.32039999999999996No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCC31940.31939999999999996No Hit
AGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC28560.2856No Hit
TCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG27580.2758No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC27410.2741No Hit
CGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG27310.2731No Hit
CTCTCGGGGCCACGCGCGCGTCCCCCGAAG27040.2704No Hit
CTGTCCCCGCCGGCGGGCCGCCCCCCCCTC25410.2541No Hit
CTGTCCCCGCCGGCGGGCCGCCCCCCCCT24620.24620000000000003No Hit
TTTCTCTCGGGGCCACGCGCGCGTCCCCCGAA24450.24450000000000002No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC22980.2298No Hit
TCTCTCGGGGCCACGCGCGCGTCCCCCGAAG22700.22699999999999998No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACT22130.22130000000000002No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC21160.21159999999999998No Hit
TCTCTCTCGGGGCCACGCGCGCGTCCCCCGAAG20590.2059No Hit
GCCTGGGTAGCTCAGTCGGTAGAGCATCAGAC19910.19910000000000003No Hit
ACCCCCGCGGGGAATCCCCCGCGAGGGGGGTCT19750.1975No Hit
CCCGGCTAGCTCAGTCGGTAGAGCATGGGAC19580.1958No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT19210.1921No Hit
GTGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC19020.1902No Hit
GGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT18420.1842No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT18350.1835No Hit
CATGGGTGGTTCAGTGGTAGAATTCTCGCCT18220.1822No Hit
GGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC17750.17750000000000002No Hit
TAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCG15930.1593No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCC15730.1573No Hit
CCCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC15630.1563No Hit
GCCTGGATAGCTCAGTCGGTAGAGCATCAGAC15420.1542No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGC14450.14450000000000002No Hit
TTCTCTCGGGGCCACGCGCGCGTCCCCCGAA14330.1433No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT13710.1371No Hit
CAGAGTGGCGCAGCGGAAGCGTGCTGGGC13450.1345No Hit
GCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG13310.1331No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGAC13040.13040000000000002No Hit
GCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG12890.1289No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATCAGAC12760.1276No Hit
TCAGAGTGGCGCAGCGGAAGCGTGCTGGGC12660.1266No Hit
TCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG12530.1253No Hit
CTGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC12080.1208No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGCC11980.1198No Hit
GGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG11840.11839999999999999No Hit
CTGTCCCCGCCGGCGGGCCGCCCCCCCCTCC11480.1148No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGA11210.1121No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC11190.1119No Hit
TCCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC11150.11150000000000002No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT10970.1097No Hit
AGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCG10720.1072No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCCGGC10710.10709999999999999No Hit
TCCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC10560.10560000000000001No Hit
ATGTACACGGAGTCGACCCAACGCGA10390.10389999999999999No Hit
CCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC10320.10319999999999999No Hit
CTCTCTCGGGGCCACGCGCGCGTCCCCCGAAG10270.10269999999999999No Hit
GGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG10260.1026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)