FastQCFastQC Report
Fri 7 Jul 2023
SRR7883751_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883751_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases34.4 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC73

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC643926.4392000000000005No Hit
CGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC526495.2649No Hit
CGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC473304.733No Hit
GCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC218762.1875999999999998No Hit
TCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC145821.4582No Hit
CCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC131601.316No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT123141.2314No Hit
GCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC118121.1812No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCT108501.085No Hit
CGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG94330.9433No Hit
TTCTCTCGGGGCCACGCGCGCGTCCCCCGAAG85670.8567No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG85080.8508No Hit
GGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC83850.8385No Hit
TCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC80120.8012No Hit
TGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG65150.6515No Hit
ACCCCCGCGGGGAATCCCCCGCGAGGGGGGTCT63250.6325No Hit
TTTCTCTCGGGGCCACGCGCGCGTCCCCCGAAG61180.6118No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC59630.5963No Hit
CTCTCGGGGCCACGCGCGCGTCCCCCGAAG57640.5764No Hit
CGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG57030.5703No Hit
TCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG52700.527No Hit
AGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGC38860.3886No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC36420.36419999999999997No Hit
TCCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC33960.3396No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC30690.3069No Hit
CGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG30480.3048No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC30300.303No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGCC30180.30179999999999996No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC27550.2755No Hit
TCTCTCGGGGCCACGCGCGCGTCCCCCGAAG27050.2705No Hit
CATGGGTGGTTCAGTGGTAGAATTCTCGCCT26990.26990000000000003No Hit
TAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGC24300.243No Hit
TAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCG24200.242No Hit
CTGTCCCCGCCGGCGGGCCGCCCCCCCCT23280.2328No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT22080.2208No Hit
AGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC21810.21810000000000002No Hit
TTTCTCTCGGGGCCACGCGCGCGTCCCCCGAA21280.21280000000000002No Hit
CCCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC20740.2074No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACT20090.2009No Hit
AGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCG19110.1911No Hit
GCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG18920.1892No Hit
CCCGGCTAGCTCAGTCGGTAGAGCATGGGAC18850.1885No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT17960.1796No Hit
TCTCTCTCGGGGCCACGCGCGCGTCCCCCGAAG17660.1766No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT17210.1721No Hit
GCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG16980.1698No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGAC16250.1625No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCC15960.1596No Hit
GGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT15940.1594No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC15650.1565No Hit
CTGTCCCCGCCGGCGGGCCGCCCCCCCCTC15230.1523No Hit
GGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC14930.1493No Hit
GTGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC14220.14220000000000002No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC13760.1376No Hit
CAGAGTGGCGCAGCGGAAGCGTGCTGGGC13700.13699999999999998No Hit
TTCTCTCGGGGCCACGCGCGCGTCCCCCGAA13660.1366No Hit
GCCTGGGTAGCTCAGTCGGTAGAGCATCAGAC13540.1354No Hit
CTGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC13260.1326No Hit
GCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG12560.1256No Hit
GGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG12120.1212No Hit
GGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG11920.11919999999999999No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGC11570.1157No Hit
CAGAGTGGCGCAGCGGAAGCGTGCTGGGCC11490.1149No Hit
CCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC11360.1136No Hit
CTCTCGGGGCCACGCGCGCGTCCCCCGAA11280.11280000000000001No Hit
GCCTGGATAGCTCAGTCGGTAGAGCATCAGAC11130.11130000000000001No Hit
TCAGAGTGGCGCAGCGGAAGCGTGCTGGGC10730.10729999999999999No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGCC10550.1055No Hit
CCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC10540.10540000000000001No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT10500.105No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATCAGAC10440.1044No Hit
CTCTCTCGGGGCCACGCGCGCGTCCCCCGAAG10380.1038No Hit
CCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCG10180.1018No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGA10140.10139999999999999No Hit
TCCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC10090.10089999999999999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)