FastQCFastQC Report
Fri 7 Jul 2023
SRR7883754_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883754_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.3 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG47240.4724No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG31900.319No Hit
CCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG24220.2422No Hit
AATAAGTGGGAGGCCCCCGGCGCCCCCCCGGT21170.2117No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG20400.20400000000000001No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG20080.20079999999999998No Hit
GCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC19930.1993No Hit
TGCGCGGGTCGGGGGGCGGGGCGGACTGT18830.1883No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC17870.1787No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG14750.1475No Hit
AAATAAGTGGGAGGCCCCCGGCGCCCCCCCGGT14510.1451No Hit
CGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG14060.1406No Hit
AACACAAAGCACCCAACTTACACTTAGGAGATT14060.1406No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG13510.1351No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC12760.1276No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC12500.125No Hit
GCGCGGGTCGGGGGGCGGGGCGGACTGT12460.12459999999999999No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG11810.1181No Hit
CCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG11270.1127No Hit
CGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC10660.10660000000000001No Hit
CGCGCGGGTCGGGGGGCGGGGCGGACTGT10630.10629999999999999No Hit
CTCTCGCTTCTGGCGCCAAGCGCCCGGCCG10610.10610000000000001No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCGC10590.10590000000000001No Hit

[OK]Adapter Content

Adapter graph