FastQCFastQC Report
Fri 7 Jul 2023
SRR7883756.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883756.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases34.4 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT129931.2993No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC107301.073No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC80450.8045No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC55440.5544No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG54700.547No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCCGG45860.4586No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT42830.4283No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC40600.406No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC39260.3926No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG32640.3264No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC31030.31029999999999996No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCCG28170.2817No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC26400.264No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC25870.2587No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT23050.2305No Hit
GGGAGAGCGACGCTCAGACAGGCGTAGCCCC22030.2203No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC21200.212No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC19850.19849999999999998No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT19720.1972No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC19130.1913No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC19110.1911No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC19070.1907No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG19030.1903No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT16670.16670000000000001No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGC16360.1636No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC16330.1633No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCTCCAGAC16060.1606No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT15480.1548No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTTATT14900.149No Hit
GGGGGGTCTCCCCCGCGGGGGCGCGCCGGC14740.1474No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATCAGAC14580.1458No Hit
TCAGAGTGGCGCAGCGGAAGCGTGCTGGGC14000.13999999999999999No Hit
CAGAGTGGCGCAGCGGAAGCGTGCTGGGC13970.1397No Hit
CTAATTTTTTGAGGCCTTGTTCCGACAAGGCTA13700.13699999999999998No Hit
GGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG13470.13470000000000001No Hit
TGAATACAAGCTTGGGCTGCAGGTCGACCCGT13320.1332No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC12880.1288No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGC12470.1247No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC12460.12459999999999999No Hit
TGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG12400.124No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGAC12040.1204No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC11750.11750000000000001No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC11530.1153No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGA11380.11379999999999998No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT11250.11249999999999999No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC11090.1109No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCCCAGAC11060.1106No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC10590.10590000000000001No Hit
TGAATACAAGCTTGGGCTGCAGGTCGACCC10560.10560000000000001No Hit
TCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAAC10100.101No Hit
AGTTGACCCGGGTTCGTTTCCCGGCCAACGCAC10010.1001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)