FastQCFastQC Report
Fri 7 Jul 2023
SRR7883757.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883757.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases34.9 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC102191.0219No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT82250.8225No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC75780.7577999999999999No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG72830.7283000000000001No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG64530.6453No Hit
TTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGG61570.6157No Hit
TTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCG50750.5075No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCTCCAGAC44890.44889999999999997No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT41350.4135No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC38910.3891No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCCG36000.36No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC33790.3379No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCT32380.3238No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC31490.3149No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC31100.311No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC27340.2734No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC26910.2691No Hit
TGCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCT26700.267No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC26470.2647No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC26310.2631No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG26180.26180000000000003No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC25670.2567No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC25190.2519No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCC23380.23379999999999998No Hit
ATGTACACGGAGTCGACCCAACGCGA22460.22460000000000002No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCCCAGAC21360.21359999999999998No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT20760.2076No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC20730.2073No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC20560.2056No Hit
ACGCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC19930.1993No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC19360.1936No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT18930.1893No Hit
CCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGG18790.1879No Hit
TCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAAC18550.1855No Hit
CTAATTTTTTGAGGCCTTGTTCCGACAAGGCTA18530.1853No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT18320.1832No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG18200.182No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC17900.179No Hit
TCTAATTTTTTGAGGCCTTGTTCCGACAAGGCTA17760.1776No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC17210.1721No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC17000.16999999999999998No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC16280.1628No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT15300.153No Hit
GGAGGCGTGGGTTCGAATCCCACTTCTGACAC14940.1494No Hit
TCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGG14670.1467No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC14040.1404No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG13730.1373No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGT13650.13649999999999998No Hit
AACACAAAGCACCCAACTTACACTTAGGAGATT13260.1326No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCCGG12980.1298No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC12690.12689999999999999No Hit
CCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC12290.12290000000000001No Hit
TGCAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG12280.12279999999999999No Hit
TCCCATATGGTCTAGCGGTTAGGATTCCTGGT12280.12279999999999999No Hit
TGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG12130.1213No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGC11910.1191No Hit
ACGTGATCGTATAGTGGTTAGTACTCTGCGT11850.11850000000000001No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC11700.117No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG11600.116No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC11520.1152No Hit
ATGGCCGAGTGGTCTAAGGCTCCAGAC11420.1142No Hit
ACCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGG11250.11249999999999999No Hit
TATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC11010.1101No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC10990.1099No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG10820.1082No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT10630.10629999999999999No Hit
ATTCTTGCGACCCGGGTTCGATTCCCGGGCGGCGC10550.1055No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC10460.1046No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGG10450.1045No Hit
ATAATTTTTTGAGGCCTTGTTCCGACAAGGCTA10310.1031No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)