FastQCFastQC Report
Fri 7 Jul 2023
SRR7883758.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883758.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.9 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC99640.9964000000000001No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT94260.9426No Hit
ATGTACACGGAGTCGACCCAACGCGA70360.7036No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC64860.6486No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG47580.4758No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG46240.4624No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT43390.4339No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC37120.3712No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC35150.3515No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC34880.3488No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCCG32990.32989999999999997No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC32130.32130000000000003No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC29620.29619999999999996No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGA29250.2925No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC25740.25739999999999996No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCTCCAGAC24980.24979999999999997No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT24950.24949999999999997No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT22970.2297No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCC21880.2188No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC20950.20950000000000002No Hit
CTAATTTTTTGAGGCCTTGTTCCGACAAGGCTA19690.1969No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG19650.1965No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC18640.1864No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC17840.1784No Hit
CCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGG17680.1768No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC17160.1716No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCCCAGAC16140.1614No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC15770.1577No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC15380.15380000000000002No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC15320.1532No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG14570.1457No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC14220.14220000000000002No Hit
CCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC13970.1397No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT13960.1396No Hit
GGAGGCGTGGGTTCGAATCCCACTTCTGACAC13590.1359No Hit
ACGTGATCGTATAGTGGTTAGTACTCTGCGT13470.13470000000000001No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGC13440.1344No Hit
AATAAGTGGGAGGCCCCCGGCGCCCCCCCGGT13370.1337No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC13020.1302No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT12950.1295No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGC12510.1251No Hit
TTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCG12470.1247No Hit
CCCGGCTAGCTCAGTCGGTAGAGCATGGGAC12370.1237No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC12290.12290000000000001No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCCGG11880.1188No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC11830.1183No Hit
ACGCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC11740.11739999999999999No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC11430.11429999999999998No Hit
ACCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGG11290.1129No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGC11210.1121No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT11200.11199999999999999No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC11110.1111No Hit
ATAATTTTTTGAGGCCTTGTTCCGACAAGGCTA11070.11069999999999999No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC10910.1091No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)