FastQCFastQC Report
Fri 7 Jul 2023
SRR7883759.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883759.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.9 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC238322.3832No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT220172.2016999999999998No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC186411.8641No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC103941.0394No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT95860.9586000000000001No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC89870.8987No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG61560.6156No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC48780.4878No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT46130.4613No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC44780.44780000000000003No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC44200.44200000000000006No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT36920.3692No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATCAGAC36820.36819999999999997No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC36260.3626No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC35360.3536No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGA31940.31939999999999996No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT31260.3126No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC31100.311No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGC30790.3079No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCTCCAGAC29530.2953No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC28630.2863No Hit
CAGAGTGGCGCAGCGGAAGCGTGCTGGGC27410.2741No Hit
TCAGAGTGGCGCAGCGGAAGCGTGCTGGGC26950.2695No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC26690.26689999999999997No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC24710.24710000000000001No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC23660.2366No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG23590.2359No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGAC23570.23570000000000002No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACT23560.2356No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGC21080.21080000000000002No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCCCAGAC19030.1903No Hit
CCCCGGATAGCTCAGTCGGTAGAGCATCAGAC18830.1883No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC18410.18409999999999999No Hit
ACGTGATCGTATAGTGGTTAGTACTCTGCGT18350.1835No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT18250.1825No Hit
GGAGGCGTGGGTTCGAATCCCACTTCTGACAC18000.18No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT17480.1748No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCG17360.1736No Hit
AAGAGTGGCGCAGCGGAAGCGTGCTGGGC17280.17279999999999998No Hit
CCCGGCTAGCTCAGTCGGTAGAGCATGGGAC16310.1631No Hit
CCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC15850.1585No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC15470.1547No Hit
ACCGGATAGCTCAGTCGGTAGAGCATCAGAC15100.151No Hit
AGTTGACCCGGGTTCGTTTCCCGGCCAACGCAC14370.1437No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCC14330.1433No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCCT13580.1358No Hit
GGGGATGTAGCTCAGTGGTAGAGCGCATGCTT13500.135No Hit
TGGGGATGTAGCTCAGTGGTAGAGCATGCTT13370.1337No Hit
TTTCTCTCGGGGCCACGCGCGCGTCCCCCGAAG13270.1327No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGG13210.1321No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC12680.1268No Hit
GTTTCCGTAGTGTAGCGGTTATCACATTCGCC12450.1245No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC12350.1235No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC12140.12140000000000001No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCC12060.1206No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGT12030.1203No Hit
TCAGAGTTGCGCAGCGGAAGCGTGCTGGGC12010.1201No Hit
ACCCGGCTAGCTCAGTCGGTAGAGCATGGGAC11730.1173No Hit
ACCCGGATAGCTCAGTCGGTAGAGCATCAGAC11640.1164No Hit
CAGTTGACCCGGGTTCGTTTCCCGGCCAACGCAC11350.11349999999999999No Hit
ACGCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC11280.11280000000000001No Hit
CTAATTTTTTGAGGCCTTGTTCCGACAAGGCTA11240.1124No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT11230.11230000000000001No Hit
ACCGGCTAGCTCAGTCGGTAGAGCATGGGAC11130.11130000000000001No Hit
GGAGGCGTGGGTTCGGATCCCACTTCTGACAC10980.10980000000000001No Hit
CAGAGTTGCGCAGCGGAAGCGTGCTGGGC10860.10859999999999999No Hit
TAGAGTGGCGCAGCGGAAGCGTGCTGGGC10590.10590000000000001No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTT10560.10560000000000001No Hit
TCCCATATGGTCTAGCGGTTAGGATTCCTGGT10370.1037No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCT10210.1021No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGA10200.10200000000000001No Hit
AGAGTCGCGCAGCGGAAGCGTGCTGGGC10090.10089999999999999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)