FastQCFastQC Report
Fri 7 Jul 2023
SRR7883760.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883760.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.6 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT198951.9895No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC141731.4173No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC97750.9775No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC94750.9475000000000001No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT71700.717No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG65680.6568No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC64720.6472No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT50550.5055No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC50550.5055No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCTCCAGAC48430.4843No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT40490.4049No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC38060.3806No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC37600.376No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC35020.3502No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC32760.3276No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG32680.3268No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC31370.3137No Hit
ACGTGATCGTATAGTGGTTAGTACTCTGCGT30720.30720000000000003No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT30520.3052No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCCCAGAC28740.2874No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC27110.2711No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC25860.2586No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC25140.2514No Hit
CCCCGGATAGCTCAGTCGGTAGAGCATCAGAC23720.2372No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATCAGAC23070.23070000000000002No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGC21930.2193No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC21580.21580000000000002No Hit
CCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC21240.2124No Hit
GGAGGCGTGGGTTCGAATCCCACTTCTGACAC19690.1969No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT18870.1887No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGAC18790.1879No Hit
TCAGAGTGGCGCAGCGGAAGCGTGCTGGGC18540.1854No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCCG18020.1802No Hit
ACGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC17220.1722No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGT16870.1687No Hit
TGGGGATGTAGCTCAGTGGTAGAGCATGCTT16570.16570000000000001No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC16470.1647No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGA16430.1643No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT16310.1631No Hit
ACCCGGATAGCTCAGTCGGTAGAGCATCAGAC16280.1628No Hit
ACCCGGCTAGCTCAGTCGGTAGAGCATGGGAC16130.1613No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCG16040.1604No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTT16040.1604No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC15940.1594No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGG15320.1532No Hit
TCCCATATGGTCTAGCGGTTAGGATTCCTGGT15280.15280000000000002No Hit
CTAATTTTTTGAGGCCTTGTTCCGACAAGGCTA14970.1497No Hit
GTTTCCGTAGTGTAGCGGTTATCACATTCGCC14370.1437No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT14050.1405No Hit
CAGAGTGGCGCAGCGGAAGCGTGCTGGGC13870.1387No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCCGG13670.1367No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGC13610.1361No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC13420.1342No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGC13230.1323No Hit
ATGGCCGAGTGGTCTAAGGCTCCAGAC13070.1307No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC12630.1263No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCC12500.125No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC12450.1245No Hit
GGAGGCGTGGGTTCGGATCCCACTTCTGACAC12260.12260000000000001No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG12130.1213No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG11810.1181No Hit
ACCGGATAGCTCAGTCGGTAGAGCATCAGAC11790.11789999999999999No Hit
CCGCGGCCCGGGTTCGATTCCCGGTCAGGGAAC11680.1168No Hit
AGTTGACCCGGGTTCGTTTCCCGGCCAACGCAC11640.1164No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT11100.11100000000000002No Hit
GTTTCCGTAGTGTAGCGGTTATCACATT10990.1099No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCC10770.1077No Hit
TAGAGTGGCGCAGCGGAAGCGTGCTGGGC10710.10709999999999999No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC10680.10679999999999999No Hit
GGGGATGTAGCTCAGTGGTAGAGCGCATGCTT10670.1067No Hit
CCCGGCTAGCTCAGTCGGTAGAGCATGGGAC10450.1045No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC10310.1031No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT10130.1013No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)