FastQCFastQC Report
Fri 7 Jul 2023
SRR7883761.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883761.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.7 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT127031.2703No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC123851.2385No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC85750.8574999999999999No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG80280.8028000000000001No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC71680.7168No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT62260.6225999999999999No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC58550.5855No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC42130.42129999999999995No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG41770.4177No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCTCCAGAC39080.3908No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT38550.3855No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC35230.3523No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC34710.3471No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT32530.3253No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC31780.31779999999999997No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC29930.2993No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC29570.2957No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC25150.2515No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC24610.2461No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC24360.24359999999999998No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC24130.24130000000000001No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT23400.234No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT23180.2318No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC21590.21589999999999998No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCCG21490.21489999999999998No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCCCAGAC21340.2134No Hit
GGAGGCGTGGGTTCGAATCCCACTTCTGACAC20930.20929999999999999No Hit
CCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC20770.2077No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC19520.19519999999999998No Hit
ACGTGATCGTATAGTGGTTAGTACTCTGCGT19320.19319999999999998No Hit
CCCCGGATAGCTCAGTCGGTAGAGCATCAGAC18140.1814No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCCGG17740.1774No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGC17630.1763No Hit
TCAGAGTGGCGCAGCGGAAGCGTGCTGGGC17410.1741No Hit
AGTTGACCCGGGTTCGTTTCCCGGCCAACGCAC16850.1685No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATCAGAC16070.16069999999999998No Hit
ACGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC15530.1553No Hit
ACCCGGCTAGCTCAGTCGGTAGAGCATGGGAC14900.149No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC14890.1489No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG14600.146No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC14500.145No Hit
CTAATTTTTTGAGGCCTTGTTCCGACAAGGCTA14380.1438No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGG14160.1416No Hit
GGAGGCGTGGGTTCGGATCCCACTTCTGACAC14110.1411No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGAC13330.1333No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGC13140.13140000000000002No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGA13070.1307No Hit
TGGGGATGTAGCTCAGTGGTAGAGCATGCTT13030.1303No Hit
CAGAGTGGCGCAGCGGAAGCGTGCTGGGC12670.12669999999999998No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC12510.1251No Hit
TAGAGTGGCGCAGCGGAAGCGTGCTGGGC12420.1242No Hit
ACCCGGATAGCTCAGTCGGTAGAGCATCAGAC12160.12160000000000001No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC12100.121No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTT12080.1208No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCG11810.1181No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC11730.1173No Hit
CCGCGGCCCGGGTTCGATTCCCGGTCAGGGAAC11610.1161No Hit
ATGGCCGAGTGGTCTAAGGCTCCAGAC11300.11299999999999999No Hit
AGTTGACCCGGGTTCGTTTCCCGGCCAACG11190.1119No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCC11160.1116No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGT10580.10579999999999999No Hit
GTTTCCGTAGTGTAGCGGTTATCACATTCGCC10420.1042No Hit
AGAGTCGCGCAGCGGAAGCGTGCTGGGC10410.1041No Hit
AGTTGACCCGGGTTCGTTTCCCGGCCAACGC10340.10339999999999999No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC10270.10269999999999999No Hit
TCCCATATGGTCTAGCGGTTAGGATTCCTGGT10260.1026No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC10120.10120000000000001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)