FastQCFastQC Report
Fri 7 Jul 2023
SRR7883762.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883762.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.7 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC251492.5149No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC185931.8592999999999997No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT150381.5038No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGA112031.1202999999999999No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC93520.9351999999999999No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT73510.7351No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC71340.7133999999999999No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT61780.6178No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC59870.5987No Hit
GGGAGAGCGACGCTCAGACAGGCGTAGCCCC51630.5163No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATCAGAC42390.42389999999999994No Hit
CGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC41390.41390000000000005No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGC40990.40990000000000004No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACT40040.4004No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC35720.3572No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT33980.3398No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC32380.3238No Hit
TGAATACAAGCTTGGGCTGCAGGTCGACCCGT31840.3184No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC30770.3077No Hit
ATGTACACGGAGTCGACCCAACGCGA30170.3017No Hit
TCAGAGTGGCGCAGCGGAAGCGTGCTGGGC30100.301No Hit
AGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC29540.2954No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGA27500.27499999999999997No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC25880.25880000000000003No Hit
TCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC23950.2395No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGC22090.2209No Hit
CGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC21060.21059999999999998No Hit
TGAATACAAGCTTGGGCTGCAGGTCGACCC20850.20850000000000002No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCTCCAGAC20210.20209999999999997No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG19550.1955No Hit
CAGAGTGGCGCAGCGGAAGCGTGCTGGGC19360.1936No Hit
TGAATACAAGCTTGGGCTGCAGGTCGACCCG18430.1843No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG18040.1804No Hit
GGGAGAGCGACGCTCAGACAGGCGTAGCCCCG18010.1801No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC16950.16949999999999998No Hit
TGGGGATGTAGCTCAGTGGTAGAGCATGCTT16460.1646No Hit
TGAATACAAGCTTGGGCTGCAGGTCGACCCGTG16320.1632No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT16160.1616No Hit
GTTTCCGTAGTGTAGCGGTTATCACATTCGCC15970.15969999999999998No Hit
ACGGAGTCGAGCTCAACCCGCAACGCGA15610.15610000000000002No Hit
CCCGGCTAGCTCAGTCGGTAGAGCATGGGAC14970.1497No Hit
GGGAGAGATCCTTCCGCAGGTTCACCTAC14650.1465No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC14510.1451No Hit
TCAGAGTTGCGCAGCGGAAGCGTGCTGGGC13670.1367No Hit
TTTCTCTCGGGGCCACGCGCGCGTCCCCCGAAG13450.1345No Hit
TCGCCCACGCCCCGCTCCCCGCCCCCGGAGC13350.1335No Hit
TGAATACAAGCTTGGGCTGCAGGTCGAC12810.1281No Hit
AGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC12730.1273No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGAC12390.12390000000000001No Hit
GGAGGCGTGGGTTCGAATCCCACTTCTGACAC12300.123No Hit
AAGAGTGGCGCAGCGGAAGCGTGCTGGGC11860.1186No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC11850.11850000000000001No Hit
GGGAGAGCGACGCTCAGACAGGCGTAGCCC11640.1164No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCCCAGAC11520.1152No Hit
TGAATACAAGCTTGGGCTGCAGGTCGACC11220.1122No Hit
AGCAGAGTCGCGCAGCGGAAGCGTGCTGGGC11190.1119No Hit
GGGGATGTAGCTCAGTGGTAGAGCGCATGCTT10880.1088No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCC10420.1042No Hit
TCCGCGTGGGTTCGTACCCCACTCCTGG10370.1037No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)