FastQCFastQC Report
Fri 7 Jul 2023
SRR7883763.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883763.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.3 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC59

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG68260.6826No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC54910.5491No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCCG51910.5191No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC51630.5163No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT45450.4545No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCC43470.43470000000000003No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT41420.4142No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG40800.40800000000000003No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC34990.3499No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC34180.3418No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG33490.3349No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC25900.259No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC25890.2589No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCTCCAGAC23930.2393No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC21830.2183No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG21590.21589999999999998No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC21260.21259999999999998No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG20810.2081No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGG18730.18730000000000002No Hit
AATAAGTGGGAGGCCCCCGGCGCCCCCCCGGT18660.18660000000000002No Hit
CTAATTTTTTGAGGCCTTGTTCCGACAAGGCTA18330.1833No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC18190.1819No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC18030.1803No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG16700.167No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC15990.1599No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG15560.15560000000000002No Hit
TCTAATTTTTTGAGGCCTTGTTCCGACAAGGCTA14930.1493No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT14730.1473No Hit
AAATAAGTGGGAGGCCCCCGGCGCCCCCCCGGT14610.1461No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC14070.1407No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT14020.1402No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGC13550.1355No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGC12450.1245No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGC12440.12440000000000001No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC12250.1225No Hit
ATAATTTTTTGAGGCCTTGTTCCGACAAGGCTA11940.11939999999999999No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC11850.11850000000000001No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT11730.1173No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC11710.1171No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCCCAGAC11630.1163No Hit
TCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCC11480.1148No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG11380.11379999999999998No Hit
ACCCCTCCTCCCCGCGCCCCCGCCC11250.11249999999999999No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC11220.1122No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG11170.1117No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC11120.1112No Hit
TGAATACAAGCTTGGGCTGCAGGTCGACCCGT10910.1091No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG10640.10640000000000001No Hit
CCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGG10520.1052No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC10360.1036No Hit
GCGCGGGTCGGGGGGCGGGGCGGACTGT10340.10339999999999999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)