FastQCFastQC Report
Fri 7 Jul 2023
SRR7883764.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883764.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.3 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC84900.849No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCCG66200.662No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT61820.6182No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCC52590.5259No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG46590.4659No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG45190.45189999999999997No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC43070.4307No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC42430.4243No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG42100.42100000000000004No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC40650.40650000000000003No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC37350.3735No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG27250.2725No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG27140.2714No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC22940.2294No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC21200.212No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT21080.21080000000000002No Hit
CTAATTTTTTGAGGCCTTGTTCCGACAAGGCTA20690.2069No Hit
AATAAGTGGGAGGCCCCCGGCGCCCCCCCGGT18630.18630000000000002No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCTCCAGAC18380.1838No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC18150.1815No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGG17070.1707No Hit
TCTAATTTTTTGAGGCCTTGTTCCGACAAGGCTA16960.1696No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT16480.1648No Hit
AAATAAGTGGGAGGCCCCCGGCGCCCCCCCGGT15020.1502No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC14760.1476No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC14680.14679999999999999No Hit
TTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCG14560.1456No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC13780.1378No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG13680.1368No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC13390.1339No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC13180.1318No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG12920.1292No Hit
ACGCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC12850.1285No Hit
CAGTCCGCCCGGAGGATTCAACCCGGCGGCGGG12300.123No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGC12290.12290000000000001No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG11890.11889999999999999No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCG11880.1188No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT11660.1166No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC11410.11410000000000001No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC11290.1129No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG11240.1124No Hit
TCGGGGAAGGTGGCTCGGGGGGCCCCGTCCGTCC11190.1119No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT11000.11No Hit
CCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGG11000.11No Hit
AGTTGACCCGGGTTCGTTTCCCGGCCAACGC10350.1035No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGAC10110.1011No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)