FastQCFastQC Report
Fri 7 Jul 2023
SRR7883765.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883765.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases34.5 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC168131.6813000000000002No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT146371.4637No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC118461.1846No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC74250.7425No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC62720.6272No Hit
GGGAGAGCGACGCTCAGACAGGCGTAGCCCC55830.5583No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT54080.5408No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC49630.4963No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC46050.46049999999999996No Hit
TGAATACAAGCTTGGGCTGCAGGTCGACCCGT45050.4505No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG39590.3959No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC38080.3808No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT37690.3769No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT36320.36319999999999997No Hit
CGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC34820.3482No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGC34550.34550000000000003No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGACT34500.345No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATCAGAC34180.3418No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCCGGC31800.318No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCTCCAGAC29970.2997No Hit
TGAATACAAGCTTGGGCTGCAGGTCGACCCGTGC26880.2688No Hit
AGCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC26420.2642No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC24310.2431No Hit
TGAATACAAGCTTGGGCTGCAGGTCGACCC23900.23900000000000002No Hit
TGAATACAAGCTTGGGCTGCAGGTCGACCCGTG23530.2353No Hit
GGGAGAGCGACGCTCAGACAGGCGTAGCCCCG22970.2297No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC22840.2284No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC22670.22669999999999998No Hit
TCAGAGTGGCGCAGCGGAAGCGTGCTGGGC22480.2248No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC20590.2059No Hit
TGAATACAAGCTTGGGCTGCAGGTCGACCCG20550.2055No Hit
TCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAAC18450.1845No Hit
TGGGGATGTAGCTCAGTGGTAGAGCATGCTT18130.1813No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCCGG18100.181No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGA17790.1779No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC17490.1749No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC16750.1675No Hit
TGAATACAAGCTTGGGCTGCAGGTCGAC15970.15969999999999998No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC15850.1585No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCCCAGAC15310.1531No Hit
TGAATACAAGCTTGGGCTGCAGGTCGACC15270.1527No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGC14800.148No Hit
GGGAGAGATCCTTCCGCAGGTTCACCTAC14470.1447No Hit
TCTAATTTTTTGAGGCCTTGTTCCGACAAGGCTA14390.1439No Hit
CTAATTTTTTGAGGCCTTGTTCCGACAAGGCTA14300.14300000000000002No Hit
TCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGC14100.14100000000000001No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT13740.1374No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC13450.1345No Hit
ACGCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC13320.1332No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT12300.123No Hit
CAGAGTGGCGCAGCGGAAGCGTGCTGGGC12280.12279999999999999No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC11940.11939999999999999No Hit
GAATACAAGCTTGGGCTGCAGGTCGACCCGT11630.1163No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT10960.1096No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG10840.1084No Hit
TCAGAGTTGCGCAGCGGAAGCGTGCTGGGC10760.10759999999999999No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC10640.10640000000000001No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGACT10560.10560000000000001No Hit
TTTCTCTCGGGGCCACGCGCGCGTCCCCCGAAG10130.1013No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)