FastQCFastQC Report
Fri 7 Jul 2023
SRR7883766.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883766.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases34.3 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC60

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC181391.8138999999999998No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT166421.6642000000000001No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC140801.4080000000000001No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC131041.3104No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG98260.9825999999999999No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAAC94850.9485No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC90920.9091999999999999No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC69030.6903No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT67100.6709999999999999No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC66560.6656No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCTCCAGAC59310.5931No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC50740.5074000000000001No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC45850.45849999999999996No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC45210.4521No Hit
CCGTGATCGTATAGTGGTTAGTACTCTGCGT44470.44470000000000004No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC41270.41269999999999996No Hit
TCGCCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC41130.41130000000000005No Hit
TGCCCGGATAGCTCAGTCGGTAGAGCATCAGAC37200.372No Hit
TCGCCGCGGCCCGGGTTCGATTCCCGGTCAGGGAAC37160.3716No Hit
TGCGCCGCTGGTGTAGTGGTATCATGCAAGATT35580.3558No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGC35560.3556No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGAC30940.3094No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC30090.3009No Hit
GTCAGGATGGCCGAGTGGTCTAAGGCCCAGAC29780.2978No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC28390.2839No Hit
ACGTGATCGTATAGTGGTTAGTACTCTGCGT28380.2838No Hit
ACGCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC28290.2829No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC26620.2662No Hit
TCGCCGCTGGTGTAGTGGTATCATGCAAGATT25970.2597No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG25940.2594No Hit
TTCCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGG23590.2359No Hit
TCAGAGTGGCGCAGCGGAAGCGTGCTGGGC23560.2356No Hit
ACCCAGGTGGCCCGGGTTCGACTCCCGGTATGGGAAC23360.2336No Hit
AGGTCGCTGGTTCGTTTCCGGCTCGAAGGAC22070.2207No Hit
GGAGGCGTGGGTTCGAATCCCACTTCTGACAC21750.21749999999999997No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCG21460.21459999999999999No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGC21050.21050000000000002No Hit
GTTTCCGTAGTGTAGCGGTTATCACATTCGCC20910.2091No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC20520.2052No Hit
TGCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC19110.1911No Hit
CCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC18720.1872No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT18050.1805No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC18020.1802No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGC17270.1727No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGA16580.1658No Hit
TCCCACATGGTCTAGCGGTTAGGATTCCTGGT16250.1625No Hit
CCCCGGATAGCTCAGTCGGTAGAGCATCAGAC16090.1609No Hit
TGGGGATGTAGCTCAGTGGTAGAGCATGCTT15960.1596No Hit
CAGAGTGGCGCAGCGGAAGCGTGCTGGGC15340.1534No Hit
TCCCATATGGTCTAGCGGTTAGGATTCCTGGT14970.1497No Hit
CCCGGATAGCTCAGTCGGTAGAGCATCAGAC14770.1477No Hit
AGTTGACCCGGGTTCGTTTCCCGGCCAACGCAC14300.14300000000000002No Hit
GGAGGCGTGGGTTCGGATCCCACTTCTGACAC14070.1407No Hit
ACCCAGGCGGCCCGGGTTCGACTCCCGGTGTGGGAA13750.13749999999999998No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT13670.1367No Hit
TAGAGTGGCGCAGCGGAAGCGTGCTGGGC13430.1343No Hit
TATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG12980.1298No Hit
CAGTTGACCCGGGTTCGTTTCCCGGCCAACGCAC12980.1298No Hit
ACGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC12870.12869999999999998No Hit
GCTTCTGTAGTGTAGTGGTTATCACGTTCGCC12770.12769999999999998No Hit
AAGCAGTTGACCCGGGTTCGTTTCCCGGCCAACG12680.1268No Hit
ACCCGGCTAGCTCAGTCGGTAGAGCATGGGAC12510.1251No Hit
CCCGGCTAGCTCAGTCGGTAGAGCATGGGAC12430.1243No Hit
TCGGCGGCGGCGGCGACTCTGGACGCGAGCCGGGCCCT12370.1237No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCCT12220.1222No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTT12140.12140000000000001No Hit
CGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC11940.11939999999999999No Hit
CTAATTTTTTGAGGCCTTGTTCCGACAAGGCTA11520.1152No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGCAC11410.11410000000000001No Hit
TCAGAGTTGCGCAGCGGAAGCGTGCTGGGC11140.1114No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCC11040.1104No Hit
CGCCGCTGGTGTAGTGGTATCATGCAAGATT10930.1093No Hit
GTTTCCGTAGTGTAGTGGTCATCACGTTCGCC10800.108No Hit
GGGGATGTAGCTCAGTGGTAGAGCGCATGCTT10540.10540000000000001No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC10540.10540000000000001No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC10400.104No Hit
GTTTCCGTAGTGTAGTGGTTATCACTTTCGCC10370.1037No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCT10360.1036No Hit
AAGAGTGGCGCAGCGGAAGCGTGCTGGGC10320.10319999999999999No Hit
ACCCGGATAGCTCAGTCGGTAGAGCATCAGAC10300.10300000000000001No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCCT10190.10189999999999999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)