FastQCFastQC Report
Fri 7 Jul 2023
SRR7883767.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR7883767.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1000000
Total Bases33.9 Mbp
Sequences flagged as poor quality0
Sequence length20-60
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC79170.7917000000000001No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG52190.5218999999999999No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCG41300.413No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC40970.4097No Hit
AGAGTGGCGCAGCGGAAGCGTGCTGGGC37740.3774No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCCG37590.3759No Hit
AAAACGATGCCGACCGGCGATGCGGCGGCGTT33060.3306No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCGCCGCCC32560.3256No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC30500.305No Hit
GGGGGGTCTCCCCCGCGGGGGCGCGCCGGC29420.2942No Hit
AGCAGAGTGGCGCAGCGGAAGCGTGCTGGGC28830.2883No Hit
ACCCCTCCTCCCCGCGCCCCCGCCCC28000.27999999999999997No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC27980.2798No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGC26530.2653No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGCC24840.2484No Hit
GCGCCGCTGGTGTAGTGGTATCATGCAAGATT23860.2386No Hit
AGTCCGCCCGGAGGATTCAACCCGGCGGCGGG23600.23600000000000002No Hit
CTAATTTTTTGAGGCCTTGTTCCGACAAGGCTA20610.20609999999999998No Hit
TGCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC20130.2013No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG19220.1922No Hit
GGAGGCGTGGGTTCGTATCCCACTTCTGACAC18980.1898No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGCC18600.186No Hit
TCTAATTTTTTGAGGCCTTGTTCCGACAAGGCTA17810.1781No Hit
CCGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC16220.16219999999999998No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGG15750.1575No Hit
ATTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC15650.1565No Hit
AGAGTTGCGCAGCGGAAGCGTGCTGGGC15400.154No Hit
GTTTCCGTAGTGTAGTGGTTATCACGTTCGC14970.1497No Hit
GGAGGCGTGGGTTCGAATCCCACTTCTGACAC13560.1356No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCC13520.1352No Hit
GCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG13290.13290000000000002No Hit
CCCCGGCTAGCTCAGTCGGTAGAGCATGGGAC13250.1325No Hit
AGCAGAGTTGCGCAGCGGAAGCGTGCTGGGC13200.132No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGC13090.13090000000000002No Hit
CCCGTGGATCGCCCCAGCTGCGGCGGGCGTCGCGG12880.1288No Hit
TTTTCCGTAGTGTAGTGGTTATCACGTTCGC12640.12639999999999998No Hit
GCGGGAGGCCCGGGTTCGTTTCCCGGCCAATGCAC12140.12140000000000001No Hit
ATAATTTTTTGAGGCCTTGTTCCGACAAGGCTA12090.12090000000000001No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAC12010.1201No Hit
GCATTGGTGGTTCAGTGGTAGAATTCTCGCC11630.1163No Hit
GGGGATGTAGCTCAGTGGTAGAGCATGCTT11280.11280000000000001No Hit
TTTCCGTAGTGTAGTGGTTATCACGTTCGCC11080.11080000000000001No Hit
GGAGGCGTGGGTTCGTATCCCACTCCTGACAC10730.10729999999999999No Hit
AGTTGACCCGGGTTCGTTTCCCGGCCAACGC10710.10709999999999999No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGC10490.10490000000000001No Hit
ACGCGGCCCGGGTTCGTTTCCCGGTCAGGGAAC10470.1047No Hit
TTCTTGCGACCCGGGTTCGTTTCCCGGGCGGCGC10280.1028No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)