FastQCFastQC Report
Tue 11 Jul 2023
SRR8197272_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR8197272_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50781013
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length12-37
%GC73

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGC28469985.606422227142259No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG21898304.31230074122389No Hit
CCCCCGCGGGGGCGCGCCGGC12176672.397878514160401No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC9540511.8787553529111365No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCG8239861.6226261575364793No Hit
TCGCTTCTGGCGCCAAGCGCCCGG6440251.2682397651263868No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC6256441.232043165424841No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC6187811.218528271580561No Hit
CCCCCCGCGGGGGCGCGCCGGC6136941.2085107479049304No Hit
CCGGCCGAGGTGGGATCCCGAGGCC5950011.1716997453359193No Hit
CGGCCGAGGTGGGATCCCGAGGCC5612421.1052201735321823No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCG4839500.9530136785573774No Hit
TGCCGGCCGAGGTGGGATCCCGAGGCC4205990.8282603578624947No Hit
CGCTTCTGGCGCCAAGCGCCCGG3365680.6627831547984283No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGC3347700.6592424613506627No Hit
CGTGGGGGGGCCGGGCCACCCCTCCCACGGCG3309470.6517140569842512No Hit
CGCTTCTGGCGCCAAGCGCCCGGCC3231850.6364288164160885No Hit
CGCTTCTGGCGCCAAGCGCCCGGC3194280.6290303818870253No Hit
TACCCCCGCGGG3089370.6083710854684998No Hit
GGTGGGGGGGCCGGGCCACCCCTCCCACGGCG3021150.5949369304625727No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCG2736830.5389474999248243No Hit
TCGGCCGAGGTGGGATCCCGAGGCC2639710.5198222414350024No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2639010.5196843946378147No Hit
CGCTTCTGGCGCCAAGCGCCCGGCCG2610800.514129168711148No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2441840.4808568903499424No Hit
GCCGGCCGAGGTGGGATCCCGAGGCC2436070.4797206388931233No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2401270.47286768383293176No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGC2373330.46736562738518034No Hit
CCGGCCGAGGTGGGATCCCGAGGCCT2308050.4545104289274418No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC2290360.4510268434385112No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCC2262060.445453894352206No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGG2249790.44303763692150055No Hit
TGCCGGCCGAGGTGGGATCCCGAGGCCT2047430.40318809709447895No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG1982030.3903092677572226No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGC1904850.3751106737472921No Hit
ATGCGTGCATTTATCAGA1873090.36885636763488744No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCGC1817860.35798025533677325No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC1813820.3571846823930038No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGC1704370.3356313510327177No Hit
GCGCAGCGGAAGCGTGCTGGGC1690690.3329374307676769No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG1671650.3291879978841698No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCC1645050.32394981959103497No Hit
CGGCCGAGGTGGGATCCCGAGGCCT1643990.32374108015529346No Hit
ACCCCCGCGGGG1642890.3235244637597127No Hit
CTCGCTTCTGGCGCCAAGCGCCCGG1536990.30267021258516447No Hit
AACGATGCCGACCGGCGATGCGGCGGCG1520660.29945444373077No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCC1500050.2953958401735704No Hit
TTGGGGGGGCCGGGCCACCCCTCCCACGGCG1460340.28757598829310477No Hit
CGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC1395370.27478183627412084No Hit
TCCGGCCGAGGTGGGATCCCGAGGCC1394530.2746164201174955No Hit
CCCCGCGGGGGCGCGCCGGC1379790.27171376041671325No Hit
TTTTGGTGACTCT1340950.26406523241275237No Hit
GCGGGGCGGACTGT1334300.2627556878394687No Hit
AACGATGCCGACCGGCGATGCGGCGGCGTT1308750.2577242797421154No Hit
GGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC1271250.25033962989277114No Hit
CCCCCGCGGGGGCGCGCCGG1254520.2470450914399837No Hit
CCCGCGGGGGCGCGCCGGC1195220.23536749847822058No Hit
GCCGGCCGAGGTGGGATCCCGAGGCCT1182770.23291579472823828No Hit
TGCGTGCATTTATCAGA1126970.221927435752414No Hit
GTGGGGGGGCCGGGCCACCCCTCCCACGGCGC1049190.20661068734489407No Hit
CCTCGCTTCTGGCGCCAAGCGCCCGGCC1042000.20519480381377977No Hit
CCTCGCTTCTGGCGCCAAGCGCCCGGC1034430.20370408916419214No Hit
TGGGGGGGCCGGGCCACCCCTCCCACGGCG1017970.20046272019031997No Hit
CCTCGCTTCTGGCGCCAAGCGCCCGG1014170.1997144090055864No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCG1004010.19771366120640405No Hit
CGCCGGCCGAGGTGGGATCCCGAGGCCT961030.1892498678590756No Hit
CCTCGCTTCTGGCGCCAAGCGCCCGGCCG942950.18568948201171173No Hit
CGCCGAGGGCGCACCACCGGCCCGTCTCGC926450.18244023607800025No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCC902350.17769436777482167No Hit
TGCGGGGCGGACTGT876170.17253889755999946No Hit
TCGGCCGAGGTGGGATCCCGAGGCCT856760.16871660279797884No Hit
CACCCCCGCGGG855510.16847044780300072No Hit
AGTGGGGGGGCCGGGCCACCCCTCCCACGGCG843200.16604631341245596No Hit
TCGCTTCTGGCGCCAAGCGCCCG841780.16576668133816078No Hit
TTGCGTGCATTTATCAGA790390.15564675718461937No Hit
CGGCCGAGGTGGGATCCCGAGGC745120.14673200788649096No Hit
CCGGCCGAGGTGGGATCCCGAGGC735840.14490455320377324No Hit
CCGGCCGAGGTGGGATCCCGAGGCCTC729060.1435694085110118No Hit
ACGATGCCGACCGGCGATGCGGCGGCG704340.13870144733032402No Hit
TTTGGTGACTCT684950.1348830910482231No Hit
TCGATGCCGACCGGCGATGCGGCGGCG680200.13394770206730616No Hit
TCGCCGGCCGAGGTGGGATCCCGAGGCCT675990.13311865204421977No Hit
CCGCCGAGGGCGCACC666850.13131876672093956No Hit
CCCGGCCGAGGTGGGATCCCGAGGCC650860.12816995202517917No Hit
CCCCGCCCCCGG650000.1280005973886342No Hit
TTGGGCGCGCGCCGCGGCTGGACGAGGCGCCG636910.1254228622812231No Hit
CCGCGGGGGCGCGCCGGC606180.11937138788468045No Hit
GACCCCCGCGGG602910.11872744641781763No Hit
TGCGGTCGGCGTC598240.11780781135657928No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTC588980.1159842951537812No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCC587040.11560226260157512No Hit
TGGGCGCGCGCCGCGGCTGGACGAGGCGCCG586420.11548016972406595No Hit
TCTTTGGTGACTCT584700.11514146045097604No Hit
CGGCCGAGGTGGGATCCCGAGGCCTC569530.11215412343192128No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT560140.11030500710964548No Hit
AACGATGCCGACCGGCGATGCGGCGGCGT553920.10908013985463426No Hit
TGCCGGCCGAGGTGGGATCCCGAGGCCTC551100.10852481418596356No Hit
TCCCCCCCGCGGGGGCGCGCCGGC532830.10492701277936302No Hit
CCCGCCGAGGGCGCACCACCGGCCCGTCTCG529010.10417476311470983No Hit
TGCCGGCCGAGGTGGGATCCCGAGGC512260.10087628618200271No Hit
TCCCGTGGATCGCCCCAGC511510.10072859318501581No Hit
CGAGGGCGCACCACCGGCCCGTCTCGC510940.1006163465073058No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT510560.10054151538883244No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)