FastQCFastQC Report
Mon 10 Jul 2023
SRR8295892_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR8295892_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1412980
Total Bases38.2 Mbp
Sequences flagged as poor quality0
Sequence length15-42
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTTTTTCGAAGCATTAAGCGGAGCC1173818.307336268029271No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGT364762.5814944302113263No Hit
CTTTTTTCGAAGCATTAAGCGGAGCCAT228571.6176449772820563No Hit
TGTGGTCGTGACTTCTAATTTGCTGGT210931.4928024458944926No Hit
AGAGAAGGTGTCTTGCTGGCGGT173371.2269812736202919No Hit
CACATGCGAGACCCGGGTTCATTTCCCGGCCG169161.1971860889750738No Hit
GTCACATGCGAGACCCGGGTTCATTTCCCGGCCG159131.1262013616611701No Hit
ACTGTGGTCGTGACTTCTAATTTGCTGGT141751.003198912935781No Hit
CCTTTTTTCGAAGCATTAAGCGGAGCC138180.9779331625359169No Hit
CTGTGGTCGTGACTTCTAATTTGCTGG134900.9547198120284789No Hit
CGCCTTTTTTCGAAGCATTAAGCGGAGCC130050.9203951931379071No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGC117060.828461832439242No Hit
CTTTTTTCGAAGCATTAAGCGGAGCCATT99620.7050347492533511No Hit
AGAGAAGGTGTCTTGCTGGCGGC99100.7013545839290011No Hit
GCATGGGAGAGGGCTGGGGTTCAATTCCCCATAC87950.622443346685728No Hit
TGTGGTCGTGACTTCTAATTTGCTGG80900.5725487975767527No Hit
ACTGTGGTCGTGACTTCTAATTTGCTGG77090.5455845093348809No Hit
TTTTTTCGAAGCATTAAGCGGAGCC72180.5108352559838073No Hit
TGTGGTCGTGACTTCTAATTTGCTGGC71190.5038287873855256No Hit
CACCCATAAGGCCGGGGTTCGATTCCCCGC69050.48868349162762387No Hit
CTTTTTTCGAAGCATTAAGCGGAGCCAC68380.4839417401520192No Hit
AGAGAAGGTGTCTTGCTGGCGG68090.4818893402595932No Hit
CATGGGAGAGGGCTGGGGTTCAATTCCCCATAC61240.4334102393522909No Hit
ACATGCGAGACCCGGGTTCATTTCCCGGCCG60810.43036702571869384No Hit
CTGTGGTCGTGACTTCTAATTTGCTG54850.38818666930883666No Hit
ACTGTGGTCGTGACTTCTAATTTGCTGGC52440.37113051847867623No Hit
AGAGAAGGTGTCTTGCTGGCG49280.3487664368922419No Hit
TCCTCGGTAGTATAGTGGTGAGTATCCG48140.3406983821427055No Hit
GCCTTTTTTCGAAGCATTAAGCGGAGCC43030.3045336805899588No Hit
CTGTGGTCGTGACTTCTAATTTGCTGAT40210.28457586094636866No Hit
GCATGGGAGAGGGCTGGGGTTCAATTCCCCATACCTCC36400.25761157270449686No Hit
TGTGGTCGTGACTTCTAATTTGCTG36320.25704539342382765No Hit
CACCCACGCGGCCCGGGTTCGATTCCCGGCAT35980.2546391314809835No Hit
GGTCTCGTGGTGTAGTGGTTATCACATCT35830.25357754532972865No Hit
CTTTTTTCGAAGCATTAAGCGGAGC33180.2348228566575606No Hit
ACTGTGGTCGTGACTTCTAATTTGCTG33070.23404436014664043No Hit
ATGGGAGAGGGCTGGGGTTCAATTCCCCATAC32300.22859488457019914No Hit
TGCGAGACCCGGGTTCATTTCCCGGCCG32100.22717943636852608No Hit
CTGTGGTCGTGACTTCTAATTTGCT31850.22541012611643477No Hit
TCACCCATAAGGCCGGGGTTCGATTCCCCGC31470.22272077453325598No Hit
CTTTTTTCGAAGCATTAAGCGGAGCCT31420.2223669124828377No Hit
GGTCTCGTCGTGTAGTGGTTATCACATCT31240.22109300910133195No Hit
ACCCATAAGGCCGGGGTTCGATTCCCCGC29810.21097255445936955No Hit
AGAGAAGGTGTCTTGCTGGCGAT29350.20771702359552152No Hit
TCCTCGGTAGTATAGTGGTGAGTATCC27910.1975257965434755No Hit
CTAAATCACTTGCATACGACTTGGTCT27770.19653498280230436No Hit
CTTTTTTCGAAGCATTAAGCGGAGCT27160.19221786578720151No Hit
GGCCTTTTTTCGAAGCATTAAGCGGAGCC27060.191510141686365No Hit
CTTTTTTCGAAGCATTAAGCGGAGCCATC24820.17565712182762672No Hit
CTTTTTTCGAAGCATTAAGCGGAGCCG24220.17141077722260756No Hit
TGTGGTCGTGACTTCTAATTTGCTGAT24210.1713400048125239No Hit
CTGTGGTCGTGACTTCTAATTTGCTGGTT23160.16390890175374032No Hit
CTTTTTTCGAAGCATTAAGCGGAGCCACT22370.15831788135713173No Hit
CCTTTTTTCGAAGCATTAAGCGGAGCCAT22230.1573270676159606No Hit
GCATGGGAGAGGGCTGGGGTTCAATTCCCCATACC21950.1553454401336183No Hit
CTCGGTAGTATAGTGGTGAGTATCCG21760.1540007643420289No Hit
CTTTTTTCGAAGCATTAAGCGGAGCCGT21220.15017905419751165No Hit
CACGCGGGCGGCCCGGGTTCGTTTCCCGGTCG20790.14713584056391457No Hit
CCATAAGGCCGGGGTTCGATTCCCCGCAACGG20560.14550807513199054No Hit
CTGTGGTCGTGACTTCTAATTTGCTAG20150.14260640631856078No Hit
TGTGGTCGTGACTTCTAATTTGCT20090.14218177185805886No Hit
GCTAAATCACTTGCATACGACTTGGTCT19630.1389262409942108No Hit
ACTGTGGTCGTGACTTCTAATTTGCTGAT19480.13786465484295604No Hit
GAATCCTGCGACCCGAGTTCATATCTCGGTGG19130.13538762049002817No Hit
TGGTCGTGACTTCTAATTTGCTGGT18810.13312290336735128No Hit
CAAGCATTCGACGGGGGTTCGATTCCCCCCG18740.13262749649676572No Hit
GCCGCCATAGCTCAGTCGGTTAGAGC18650.13199054480601283No Hit
ACCCCAACGCAAGGCGGGGTGCAATTATTAG17920.12682415886990617No Hit
CCGTGGCGACGCTGGTTCGTTTCCAGCCGC17750.12562102789848403No Hit
CATGCGAGACCCGGGTTCATTTCCCGGCCG17540.12413480728672734No Hit
CTCACCCATAAGGCCGGGGTTCGATTCCCCGC17330.12264858667497064No Hit
GTGGGTTCGTGGCGGCTAGCGTTTAGT17320.12257781426488698No Hit
TATCACAGCCAGCTTTGATGTGC16630.11769451796911491No Hit
CTGTGGTCGTGACTTCTAATTTGCCG16500.11677447663802744No Hit
GTGCAATTATTAGAACAGACC16390.11599598012710724No Hit
GTGGTCGTGACTTCTAATTTGCTGGT16330.11557134566660533No Hit
GCATCGGTGGTTCAGTGGTAGAATGCTC16070.11373126300443036No Hit
GCAGTCATGTCCGAGTGGTTAAGG15840.11210349757250634No Hit
CTTTTTTCGAAGCATTAAGCGGAGTC15670.11090036660108422No Hit
CTGTGGTCGTGACTTCTAATTTGCTGCT15590.11033418732041501No Hit
CTGTGGTCGTGACTTCTAATTTGC15580.11026341491033136No Hit
ACTGTGGTCGTGACTTCTAATTTGCT15480.10955569080949483No Hit
GAATCCTGCGACCCGAGTTCAGATCTCGGTGG15400.10898951152882559No Hit
GGGGGTATAGCTCAGTGGTAGAGC15280.10814024260782176No Hit
GGCCTTTTTTCGAAGCATTAAGCGGAGCCAT14960.10587552548514487No Hit
AAGCATTCGACGGGGGTTCGATTCCCCCCG14590.10325694631204971No Hit
CATGGGAGAGGGCTGGGGTTCAATTCCCCATACCTCC14240.10077991195912187No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)